CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
plastid 2
peroxisome 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, peroxisome, plastid, secretory
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	EES13315	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	97.91	97.91
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	61.19	97.62
Zm00001d045123_P001	Maize	nucleus	45.07	74.94
EER93019	Sorghum	nucleus	46.87	73.19
OQU93426	Sorghum	cytosol	38.66	72.55
Os06t0181300-01	Rice	nucleus	33.88	67.76
TraesCS7A01G145200.1	Wheat	nucleus	40.6	65.23
TraesCS7B01G047400.1	Wheat	nucleus	40.45	64.99
TraesCS7D01G146500.1	Wheat	nucleus	40.15	64.66
KRH41741	Soybean	nucleus	6.27	32.31
KRH30478	Soybean	nucleus	18.66	26.65
KRG98140	Soybean	nucleus	18.36	26.28
VIT_06s0004g08050.t01	Wine grape	nucleus	18.06	25.26
CDY41924	Canola	nucleus	14.48	25.13
GSMUA_Achr4P27790_001	Banana	nucleus	10.3	24.73
Bra020373.1-P	Field mustard	nucleus	10.0	24.01
CDY32708	Canola	nucleus	2.69	24.0
KRH63009	Soybean	nucleus	15.52	23.74
GSMUA_Achr9P30360_001	Banana	nucleus	10.9	23.55
CDY32710	Canola	cytosol	2.24	23.44
Solyc06g082510.2.1	Tomato	nucleus	16.27	23.34
CDY43862	Canola	nucleus	13.88	23.19
AT1G15720.1	Thale cress	nucleus	13.28	22.82
CDY27805	Canola	nucleus	13.28	22.59
Bra039470.1-P	Field mustard	nucleus	13.28	22.59
PGSC0003DMT400078128	Potato	nucleus	14.93	21.55
CDY32992	Canola	nucleus	13.73	21.2
KRH54884	Soybean	nucleus	15.52	21.1
AT5G58340.1	Thale cress	nucleus	13.43	20.09
Bra002659.1-P	Field mustard	nucleus	12.69	19.63
OQU91491	Sorghum	nucleus	16.72	19.05

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	Gene3D:3.30.9.10	Gene3D:3.50.50.60	EntrezGene:8054113	UniProt:C5YT71
EnsemblPlants:EES15771	ProteinID:EES15771	ProteinID:EES15771.3	InterPro:FAD-dep_OxRdtase	InterPro:FAD/NAD-bd_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008171	GO:GO:0008757	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491
GO:GO:0016740	GO:GO:0019438	GO:GO:0032259	GO:GO:0043248	GO:GO:0055114	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:IPR036188	InterPro:Myb_dom	PFAM:PF00249	PFAM:PF01266	PFscan:PS51294
PANTHER:PTHR13847	PANTHER:PTHR13847:SF248	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3008G061601	SUPFAM:SSF46689
unigene:Sbi.3164	UniParc:UPI000B8BA38D	RefSeq:XP_002441936.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:6557387..6563193

Molecular Weight (calculated)

72296.0 Da

IEP (calculated)

6.131

GRAVY (calculated)

-0.221

Length

670 amino acids

Sequence
(BLAST)

001: MPRVTPLGAS LILEHVLADP SVPAAVVTKL LVALPFPSHP TPRLRRAVLL HHLAADPVSE SSLDTLQLLA ALPAPASPIA AAHIAVAAYL AVSASDFDVA
101: VGALFARPNG RARLAVDEGG SSALASDEVM TTVDQFEAAV GNSFSQAVLR GLWGDRSATE ERVRDLLAAE WAAIGPSLLV QAAERIVGDG AVETWRAADE
201: ATRAKLRILA GEERTHEILR KLEEPTSSAN PISTPAVEKV INSLKTSCAE LHSVVEDPLP AAKAVADEVL AARMEKSVSL DAEEARGQPT TCGTAGPSAP
301: NDKGKGPSTG KPYSLMDWNP TARTFQWEES PGPESSEPSL RRPHLPSPRR APVSPLPPGE NKNRRRRARK WCLLEEETLR QGVEQYGSGN WKDILNNNPD
401: VFIGRTPVDL KDKWRNMINR YRGIVRPPTT EKAADILLEA LFSACQNLAD EASSLPSEQK EFKLYKQHVD DLHHLAGNYD SVIVCLGAKV RSLPELANKL
501: PLRTCRGVIA EFKLPSDTVE EYGSQSPSIL SDAWLAFQGP RSVSIGSTWQ WKSENDSSTV SDEESLTAME ELLPKASGVY PRINKWDFVG ARAGIRAMPP
601: LTANGSLPLL GCLDDLLGKK SNCTFWLVGG LGARGLLYHG LVGKLTAKAV ISCDENIIPS EFTCWNTIKP

Best Arabidopsis Sequence Match ( AT2G22650.1 )
(BLAST)

001: MITAVLHPCS SASLSLPNRP PLRYAILGAG FAGISVAWHL LKESPKELRL SVDVYDEVGI GGGASGVSGG LLHPYSPKGK LLWHGAECWR ECLELLNVAE
101: TAASSSYQST ENRDFSESFG NFMVRRRGIL RPATNAKTLD LMSDNARNCL ASCVVETIDK DGAQNLVPNL YLPLNCAFYF PGAMNVNPHR YLQALFLACQ
201: SSAKTSLGRK NITLVNKSIT DVLELEGGYD AVVICLGSKV DFLPGLTGKL PLRTCRGVIT HMQLHESARG SYPDDGPSIL SDAWLAVQGP RNLHMGSTWE
301: WQSRNYSSDV PAEEASRALN ELLPKASAVY PDIEKWEFAG ARAGLRAMPP VTSHGSLPLL GCVNQLIGAG QFCNFWVFSG LGSRGLLYHA WLGKLMSKAV
401: LSCNEELLPS ELTSWKKNRQ

Arabidopsis Description

FAD-dependent oxidoreductase family protein [Source:UniProtKB/TrEMBL;Acc:Q5S4X7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.