CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98855
KRH37954
KRH46102

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	KRG98855	AT5G54810.1	21798944
AT1G15720.1	KRH37954	AT5G54810.1	21798944
AT1G15720.1	KRH46102	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63009	Soybean	nucleus	67.14	75.57
KRH41741	Soybean	nucleus	17.65	66.92
VIT_06s0004g08050.t01	Wine grape	nucleus	34.08	35.07
KRG98140	Soybean	nucleus	32.05	33.76
KRH30478	Soybean	nucleus	30.22	31.77
PGSC0003DMT400078128	Potato	nucleus	29.21	31.03
Solyc06g082510.2.1	Tomato	nucleus	28.4	29.98
GSMUA_Achr9P30360_001	Banana	nucleus	17.85	28.39
Bra039470.1-P	Field mustard	nucleus	22.11	27.66
CDY27805	Canola	nucleus	22.11	27.66
CDY41924	Canola	nucleus	21.1	26.94
CDY43862	Canola	nucleus	21.5	26.43
GSMUA_Achr4P27790_001	Banana	nucleus	14.81	26.16
CDY32992	Canola	nucleus	22.72	25.81
AT1G15720.1	Thale cress	nucleus	20.28	25.64
Zm00001d045123_P001	Maize	nucleus	20.28	24.81
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	21.1	24.76
Zm00001d036356_P005	Maize	nucleus	21.7	24.6
Zm00001d007141_P003	Maize	nucleus	21.7	24.37
Bra020373.1-P	Field mustard	nucleus	13.79	24.37
Bra002659.1-P	Field mustard	nucleus	21.3	24.25
EER93019	Sorghum	nucleus	21.1	24.24
TraesCS2D01G077000.1	Wheat	nucleus	17.85	24.18
TraesCS7D01G146500.1	Wheat	nucleus	20.08	23.8
TraesCS7B01G047400.1	Wheat	nucleus	20.08	23.74
TraesCS2A01G079700.1	Wheat	plastid	18.05	23.61
TraesCS7A01G145200.1	Wheat	nucleus	19.88	23.5
AT5G58340.1	Thale cress	nucleus	21.3	23.44
Os07t0695900-01	Rice	nucleus	18.26	23.44
CDY32710	Canola	cytosol	3.04	23.44
OQU93426	Sorghum	cytosol	16.84	23.25
TraesCS2B01G094500.1	Wheat	plastid	17.44	22.75
CDY32708	Canola	nucleus	3.45	22.67
HORVU2Hr1G013090.1	Barley	nucleus	17.24	22.43
Os06t0181300-01	Rice	nucleus	11.36	16.72
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	21.1	15.52
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	21.1	15.52
OQU91491	Sorghum	nucleus	16.02	13.44
Zm00001d013827_P001	Maize	extracellular, nucleus	15.82	13.04

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100777809	MapMan:15.5.2.2	EMBL:ACUP02003591	EnsemblPlantsGene:GLYMA_06G216400	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	UniProt:I1KDB0
InterPro:IPR017930	ProteinID:KRH54879.1	ProteinID:KRH54880.1	ProteinID:KRH54881.1	ProteinID:KRH54882.1	ProteinID:KRH54883.1
EnsemblPlants:KRH54884	ProteinID:KRH54884	ProteinID:KRH54884.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR21717	PANTHER:PTHR21717:SF39	InterPro:SANT/Myb	SUPFAM:SSF46689	UniParc:UPI0001BA58D7	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:22548754..22555195

Molecular Weight (calculated)

55380.2 Da

IEP (calculated)

4.658

GRAVY (calculated)

-0.532

Length

493 amino acids

Sequence
(BLAST)

001: MEGGGDVKGW ALEFLLRAQN PVVPSNLIKK VILIVPLSDF YSRLKKTLLL RALQDHLFAV SVPESVLETL EQVEELHRLG DDDDGALVTT SSAMSAAYCA
101: VAVECTLKHL LLELHNNPAY LGAVNRIWRG RVRLMSGSGE GSLLLSPELE RWRTDIEASL LDSSVRERLA SIDTRRDAVF KLRDYLKEAW TDLGPSFLER
201: AALAHINNNA LAANHSEDSQ QPEREIEKCT AAPAEEVHPS TDVEIQKVGE CGSVELQKLA EDSLLDLLEV NEEASMEEQS RDVDVPCPHA INDNEADLME
301: KDQTSAEEVL PSTTVEVQKV RECGSVELQK LAKDSLLNSL EVNEEAHIES RDADVPCPLV ISNNEADLME KDQTSIPHNH DHKPSLMERN SSARIYEWDD
401: SIDGLEDGTS DHATRFNLPS PKGRKVSPLN KYKPANITKR RKVKKWSQLE EETLRTAVDK FGRGNWKLIL DSHKDIFEER TEVDLKDKWR NMT

Best Arabidopsis Sequence Match ( AT1G06910.1 )
(BLAST)

001: MALSQWKEAI LEGIFMEIED GIVEEKNLER LENLVEILHK EGSKVPKSVT EAYCKVAVEC TVKCLAYEKD AKKAYTEAIK TIWLGRIMPL CDKVSCLVTL
101: DLLKCCRRLW KAHTDDKACK TLMDEDTRDK ALVCLRKVVL DLNPNLVLEN LNMDESDEIE SSEESEETES MVEAREGVGN QNSQASEAME EDDQESLLDT
201: ELERPTSGGS KAVYVPSQFN PIPSAVVDRA LRKLRASKIE LMKALEKGRP SNLNNETITE QENDVANPSA TNAAPRPSLM EPRSTAHTYE WNDSIDDSDG
301: EMGDDIERIN KSKRKRIVVS PLKRNRCSEG ARRPKLPWST AETLAVLKGY EKYGANWKRI KDENPVLVRR TNGDIKDKFR VEMRREERRH

Arabidopsis Description

TRFL7TRFL7 [Source:UniProtKB/TrEMBL;Acc:A0A178W486]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.