Factsheet for Bra002659.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32992	Canola	nucleus	95.38	95.16
Bra039470.1-P	Field mustard	nucleus	58.89	64.72
AT5G58340.1	Thale cress	nucleus	63.51	61.38
Bra020373.1-P	Field mustard	nucleus	34.18	53.05
VIT_06s0004g08050.t01	Wine grape	nucleus	24.25	21.92
Solyc06g082510.2.1	Tomato	nucleus	23.56	21.84
KRH63009	Soybean	nucleus	21.71	21.46
KRH30478	Soybean	nucleus	23.09	21.32
KRH54884	Soybean	nucleus	24.25	21.3
KRG98140	Soybean	nucleus	22.4	20.73
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	20.09	20.71
PGSC0003DMT400078128	Potato	nucleus	21.94	20.47
Zm00001d045123_P001	Maize	nucleus	18.71	20.1
TraesCS7B01G047400.1	Wheat	nucleus	19.17	19.9
TraesCS2B01G094500.1	Wheat	plastid	17.32	19.84
TraesCS2D01G077000.1	Wheat	nucleus	16.63	19.78
TraesCS7A01G145200.1	Wheat	nucleus	18.94	19.66
Zm00001d007141_P003	Maize	nucleus	19.86	19.59
TraesCS7D01G146500.1	Wheat	nucleus	18.71	19.47
TraesCS2A01G079700.1	Wheat	plastid	16.86	19.36
Zm00001d036356_P005	Maize	nucleus	19.17	19.08
OQU93426	Sorghum	cytosol	15.7	19.05
Os07t0695900-01	Rice	nucleus	16.86	19.01
EER93019	Sorghum	nucleus	18.71	18.88
KRH41741	Soybean	nucleus	5.54	18.46
HORVU2Hr1G013090.1	Barley	nucleus	15.7	17.94
Os06t0181300-01	Rice	nucleus	13.16	17.01
GSMUA_Achr4P27790_001	Banana	nucleus	9.24	14.34
GSMUA_Achr9P30360_001	Banana	nucleus	10.16	14.19
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	19.86	12.84
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	19.63	12.69
Zm00001d013827_P001	Maize	extracellular, nucleus	14.32	10.37
OQU91491	Sorghum	nucleus	13.16	9.69

Protein Annotations

EnsemblPlants:Bra002659.1	EnsemblPlants:Bra002659.1-P	EnsemblPlantsGene:Bra002659	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	PANTHER:PTHR21717	PANTHER:PTHR21717:SF39	SUPFAM:SSF46689
UniParc:UPI0002545347	UniProt:M4CEM8	MapMan:15.5.2.2	:	:	:

Description

AT5G58340 (E=6e-160) | DNA binding

Coordinates

chrA10:+:8359365..8360861

Molecular Weight (calculated)

48588.9 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.686

Length

433 amino acids

Sequence
(BLAST)

001: MEVMDKWVAE FLIRSQHNPT VSPTNLLSAL RFGDSDECVT LKVSSVLRDL HDSLLRGSVD EGTLDLLEIL EKLQRSVITE SHKSAYCWTA AECTLRFMWP
101: LDPLDGLFTD ALERIWTKRI GSLKESGSGL VSDELVKWET DLKKAVEDPE MYQRIRESNI RYTAISFLNQ LLKEQWGLLG SSSLEAVAQR RFRNRKGENN
201: VEGDGVRSRE GLNGVGERVG RMESDNIDNS NENGDNRDVE GVGCLEDDGI DKVNEQLAAE EEGTMGAQEQ EHESSLDKGD KMAARELKDY LLEIQRQIDP
301: PSTRQVQEPN NAFDHSVNVT PQPSRVKRSG TSGQDHIETP DNASEKGSSS QGTWSGRVRP RLSSPVPLNV SPLKKINSPV RRPKKFWTPE EVEALRAGVK
401: EYGKAWKDIK NANPAVLAQR TEVSTSFVYI YTL

Best Arabidopsis Sequence Match ( AT5G58340.1 )
(BLAST)

001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.