Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES13315 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | EES13315 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93019 | Sorghum | nucleus | 74.23 | 61.77 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 71.99 | 61.19 |
| Os06t0181300-01 | Rice | nucleus | 54.06 | 57.61 |
| Zm00001d007141_P003 | Maize | nucleus | 69.75 | 56.72 |
| Zm00001d036356_P005 | Maize | nucleus | 67.23 | 55.17 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 61.62 | 52.76 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 61.06 | 52.4 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 61.06 | 52.28 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 72.55 | 38.66 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 71.99 | 38.36 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 28.01 | 20.88 |
| KRH41741 | Soybean | nucleus | 7.56 | 20.77 |
| KRH63009 | Soybean | nucleus | 24.65 | 20.09 |
| CDY32708 | Canola | nucleus | 4.2 | 20.0 |
| Solyc06g082510.2.1 | Tomato | nucleus | 25.77 | 19.7 |
| CDY41924 | Canola | nucleus | 21.29 | 19.69 |
| KRH30478 | Soybean | nucleus | 25.77 | 19.62 |
| KRG98140 | Soybean | nucleus | 25.21 | 19.23 |
| PGSC0003DMT400078128 | Potato | nucleus | 24.93 | 19.18 |
| AT1G15720.1 | Thale cress | nucleus | 20.73 | 18.97 |
| CDY43862 | Canola | nucleus | 21.29 | 18.95 |
| Bra020373.1-P | Field mustard | nucleus | 14.29 | 18.28 |
| CDY27805 | Canola | nucleus | 19.61 | 17.77 |
| Bra039470.1-P | Field mustard | nucleus | 19.61 | 17.77 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 15.41 | 17.74 |
| CDY32992 | Canola | nucleus | 21.01 | 17.28 |
| KRH54884 | Soybean | nucleus | 23.25 | 16.84 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 12.89 | 16.49 |
| AT5G58340.1 | Thale cress | nucleus | 20.45 | 16.29 |
| Bra002659.1-P | Field mustard | nucleus | 19.05 | 15.7 |
| CDY32710 | Canola | cytosol | 2.8 | 15.62 |
| OQU91491 | Sorghum | nucleus | 24.09 | 14.63 |
Protein Annotations
| EnsemblPlants:OQU93426 | EnsemblPlantsGene:SORBI_3001G537400 | Gene3D:1.10.246.220 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF39 | ProteinID:OQU93426 | ProteinID:OQU93426.1 |
| SEG:seg | SUPFAM:SSF46689 | UniParc:UPI000B8BAFF4 | UniProt:A0A1Z5SC80 | MapMan:15.5.2.2 | : |
Description
hypothetical protein
Coordinates
chr1:-:80040266..80042340
Molecular Weight (calculated)
38067.3 Da
IEP (calculated)
6.059
GRAVY (calculated)
-0.064
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTAAEATLI LDHVLGDPSF SASVAEALLA ALPSLSPSHR TRRLCRAVLL RNLAADPVSE SALETLHLLA SLPASASHIA AAHIAVAAFL VVSAPDFDAT
101: VRELFPRPND RAVDEGGSTA LASDVVIATA DQFEAAVGNY SSQTILRGLW GNRAAAEERV RDLLAVEWAA IGPSKLVMAA ERIVGDGAVE TWRAADEATR
201: AKLRILAGEE NTRVILAKLE EPASNANPIS TPAVEKAIDA LKTSCADLHN VVEDPLPAVK AVADEVLAAR MDKGVSFNAE GEIGQPTTCD AAGPSKPHLP
301: SPRRMPPSPL PPQENISKHR RARKYGIGNW RDILNHNLDI FIGRTTVDLK DKWRNMT
101: VRELFPRPND RAVDEGGSTA LASDVVIATA DQFEAAVGNY SSQTILRGLW GNRAAAEERV RDLLAVEWAA IGPSKLVMAA ERIVGDGAVE TWRAADEATR
201: AKLRILAGEE NTRVILAKLE EPASNANPIS TPAVEKAIDA LKTSCADLHN VVEDPLPAVK AVADEVLAAR MDKGVSFNAE GEIGQPTTCD AAGPSKPHLP
301: SPRRMPPSPL PPQENISKHR RARKYGIGNW RDILNHNLDI FIGRTTVDLK DKWRNMT
001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.