Factsheet for Os06t0181300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0135900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	Os08t0135900-01	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G047400.1	Wheat	nucleus	68.66	55.16
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	68.66	54.76
TraesCS7A01G145200.1	Wheat	nucleus	68.06	54.68
Zm00001d045123_P001	Maize	nucleus	65.67	54.59
TraesCS7D01G146500.1	Wheat	nucleus	67.76	54.57
OQU93426	Sorghum	cytosol	57.61	54.06
EER93019	Sorghum	nucleus	65.97	51.52
Zm00001d007141_P003	Maize	nucleus	63.28	48.29
Zm00001d036356_P005	Maize	nucleus	60.9	46.9
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	68.36	34.18
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	67.76	33.88
Os07t0695900-01	Rice	nucleus	22.09	19.27
KRH30478	Soybean	nucleus	26.57	18.98
CDY32710	Canola	cytosol	3.58	18.75
KRG98140	Soybean	nucleus	25.37	18.16
VIT_06s0004g08050.t01	Wine grape	nucleus	22.39	15.66
CDY41924	Canola	nucleus	17.01	14.77
KRH63009	Soybean	nucleus	19.1	14.61
Solyc06g082510.2.1	Tomato	nucleus	20.0	14.35
CDY43862	Canola	nucleus	16.42	13.72
Bra039470.1-P	Field mustard	nucleus	16.12	13.71
CDY27805	Canola	nucleus	16.12	13.71
PGSC0003DMT400078128	Potato	nucleus	18.51	13.36
Bra002659.1-P	Field mustard	nucleus	17.01	13.16
CDY32992	Canola	nucleus	16.72	12.9
GSMUA_Achr4P27790_001	Banana	nucleus	10.45	12.54
Bra020373.1-P	Field mustard	nucleus	10.45	12.54
AT1G15720.1	Thale cress	nucleus	14.33	12.31
KRH54884	Soybean	nucleus	16.72	11.36
AT5G58340.1	Thale cress	nucleus	14.33	10.71
GSMUA_Achr9P30360_001	Banana	nucleus	9.55	10.32
CDY32708	Canola	nucleus	0.9	4.0
KRH41741	Soybean	nucleus	1.49	3.85

Protein Annotations

MapMan:15.5.2.2	EMBL:AK241456	UniProt:B7F8T8	ProteinID:BAS96467.1	GO:GO:0000003	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058
GO:GO:0009791	GO:GO:0009901	GO:GO:0009908	GO:GO:0009987	GO:GO:0010152	GO:GO:0016043
GO:GO:0031627	GO:GO:0043067	EnsemblPlantsGene:Os06g0181300	EnsemblPlants:Os06t0181300-01	PANTHER:PTHR21717	PANTHER:PTHR21717:SF39
UniParc:UPI000188AF6E	SEG:seg	:	:	:	:

Description

ANTHER INDEHISCENCE 1Similar to terminal acidic SANT 1. (Os06t0181300-01)

Coordinates

chr6:+:4015962..4019316

Molecular Weight (calculated)

34604.8 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.012

Length

335 amino acids

Sequence
(BLAST)

001: MPRLMPEDAS LLLDHVVGDP SVPAAAANAA LAALPFPSRP TPRLLRASLL RRLAADPVSA AALDSLQLLA SLPSSPSPAA PAAAAAAAAH LAVAAYLAVS
101: APDFDAAAGA LFGRPGGRAR RAVEEGGAAA LASDEADAVA DQFEAAVGNS FSQTVLRGLW GDRAAAEERV RELLAVEWAA IGQSRLEMAA ERIVGDGAIE
201: TWRAADEVTR AKYRLLAGEQ RAREIEGKLG ETIPQGNQIS TPEVHKVMDA LKSSCANLHS VVEDPLPAAK AAADEVLAAR MDKAVDLNAG EVSNQPTACD
301: IAGPSAPADN LDAPRKGTAA SLMDWNPTAR TFQVW

Best Arabidopsis Sequence Match ( AT2G32090.2 )
(BLAST)

001: MVFGFEEIES PDFGDLQVVW LNLPGAFAMH IIQRNPSTNL PEGPYSATSA VKDPSHLPMG HHICFSVPNF DSFLHSLKEK GIETFQKSLP DGKVKQVFFF
101: DPDGNGLEVA SRS

Arabidopsis Description

At2g32090/F22D22.16 [Source:UniProtKB/TrEMBL;Acc:Q9SKZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.