Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- peroxisome 1
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES13315 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | EES13315 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045123_P001 | Maize | nucleus | 73.1 | 76.18 |
| EER93019 | Sorghum | nucleus | 74.29 | 72.73 |
| OQU93426 | Sorghum | cytosol | 61.19 | 71.99 |
| Os06t0181300-01 | Rice | nucleus | 54.76 | 68.66 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 65.0 | 65.47 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 64.76 | 65.23 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 64.29 | 64.9 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 98.1 | 61.49 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 97.62 | 61.19 |
| KRH41741 | Soybean | nucleus | 9.76 | 31.54 |
| KRH30478 | Soybean | nucleus | 30.0 | 26.87 |
| CDY32710 | Canola | cytosol | 4.05 | 26.56 |
| KRG98140 | Soybean | nucleus | 29.52 | 26.5 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 29.05 | 25.47 |
| CDY41924 | Canola | nucleus | 23.33 | 25.39 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 16.67 | 25.09 |
| Bra020373.1-P | Field mustard | nucleus | 16.19 | 24.37 |
| CDY32708 | Canola | nucleus | 4.29 | 24.0 |
| KRH63009 | Soybean | nucleus | 24.76 | 23.74 |
| Solyc06g082510.2.1 | Tomato | nucleus | 26.19 | 23.55 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 17.38 | 23.55 |
| AT1G15720.1 | Thale cress | nucleus | 21.67 | 23.33 |
| CDY43862 | Canola | nucleus | 22.14 | 23.19 |
| CDY27805 | Canola | nucleus | 21.43 | 22.84 |
| Bra039470.1-P | Field mustard | nucleus | 21.43 | 22.84 |
| PGSC0003DMT400078128 | Potato | nucleus | 24.05 | 21.77 |
| CDY32992 | Canola | nucleus | 22.38 | 21.66 |
| KRH54884 | Soybean | nucleus | 24.76 | 21.1 |
| AT5G58340.1 | Thale cress | nucleus | 21.9 | 20.54 |
| Bra002659.1-P | Field mustard | nucleus | 20.71 | 20.09 |
| OQU91491 | Sorghum | nucleus | 26.9 | 19.22 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | EntrezGene:8064686 | UniProt:C5X927 | EnsemblPlants:EER98688 | ProteinID:EER98688 |
| ProteinID:EER98688.1 | GO:GO:0000783 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003691 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031627 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF39 | InterPro:SANT/Myb | SMART:SM00717 | EnsemblPlantsGene:SORBI_3002G165300 | SUPFAM:SSF46689 | unigene:Sbi.10367 |
| UniParc:UPI0001A83C72 | RefSeq:XP_002462167.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:51553669..51556562
Molecular Weight (calculated)
45000.3 Da
IEP (calculated)
6.202
GRAVY (calculated)
-0.315
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRVTPVGAS LILEHVLADP SVPAAVVTKL LVALPFPSHP TPRLRRAVLL RRLAADPVSE SSLDTLQLLA ALPAPASPIA AAHIAVAAYL AVSASDFDDA
101: AGALFARPNG RARLAVDEGG SPALASDEVM TTVDQFEAAV GNSFSQAVLR GLWGDRSATE ERVRELLAAE WAAIGPSLLV QAAERIVGDG AVETWRAADE
201: ATRAKLRILA GEERTHEILS KLEEPTSSAN PISTPAVEKV INSLKTSCAE LHSVVEDPLP AAKAVADEVL AARTEKSVSL DAEEARGQPT TCGTAGPSAP
301: NDKGKGPSTG KPHSLMDWNP TARTFQWEES PGPESSEPSL RRPHLPSPRR APVSPLPPGE NKNRRRRARK WCLLEEETLR QGVEQYGSGN WKDILNNNPD
401: VFIGRTPVDL KDKWRNMINR
101: AGALFARPNG RARLAVDEGG SPALASDEVM TTVDQFEAAV GNSFSQAVLR GLWGDRSATE ERVRELLAAE WAAIGPSLLV QAAERIVGDG AVETWRAADE
201: ATRAKLRILA GEERTHEILS KLEEPTSSAN PISTPAVEKV INSLKTSCAE LHSVVEDPLP AAKAVADEVL AARTEKSVSL DAEEARGQPT TCGTAGPSAP
301: NDKGKGPSTG KPHSLMDWNP TARTFQWEES PGPESSEPSL RRPHLPSPRR APVSPLPPGE NKNRRRRARK WCLLEEETLR QGVEQYGSGN WKDILNNNPD
401: VFIGRTPVDL KDKWRNMINR
001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
Arabidopsis Description
TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.