Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41924 | Canola | nucleus | 56.15 | 56.74 |
| AT5G58340.1 | Thale cress | nucleus | 64.36 | 56.03 |
| Bra039470.1-P | Field mustard | nucleus | 56.15 | 55.58 |
| CDY27805 | Canola | nucleus | 56.15 | 55.58 |
| KRH41741 | Soybean | nucleus | 7.69 | 23.08 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 27.95 | 22.76 |
| Solyc06g082510.2.1 | Tomato | nucleus | 26.67 | 22.27 |
| KRH63009 | Soybean | nucleus | 24.36 | 21.69 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 23.33 | 21.67 |
| KRH30478 | Soybean | nucleus | 25.38 | 21.11 |
| OQU93426 | Sorghum | cytosol | 18.97 | 20.73 |
| PGSC0003DMT400078128 | Potato | nucleus | 24.62 | 20.69 |
| TraesCS2D01G077000.1 | Wheat | nucleus | 18.97 | 20.33 |
| KRH54884 | Soybean | nucleus | 25.64 | 20.28 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 21.54 | 20.14 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 21.54 | 20.14 |
| Os07t0695900-01 | Rice | nucleus | 19.74 | 20.05 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 21.28 | 19.95 |
| TraesCS2B01G094500.1 | Wheat | plastid | 19.23 | 19.84 |
| KRG98140 | Soybean | nucleus | 23.33 | 19.44 |
| EER93019 | Sorghum | nucleus | 21.28 | 19.35 |
| Zm00001d007141_P003 | Maize | nucleus | 21.54 | 19.13 |
| Zm00001d045123_P001 | Maize | nucleus | 19.74 | 19.11 |
| TraesCS2A01G079700.1 | Wheat | plastid | 18.46 | 19.1 |
| Zm00001d036356_P005 | Maize | nucleus | 21.28 | 19.08 |
| HORVU2Hr1G013090.1 | Barley | nucleus | 18.46 | 19.0 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 12.82 | 16.13 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 10.51 | 14.7 |
| Os06t0181300-01 | Rice | nucleus | 12.31 | 14.33 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 23.59 | 13.73 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 22.82 | 13.28 |
| OQU91491 | Sorghum | nucleus | 17.44 | 11.56 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 16.92 | 11.04 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | EntrezGene:838141 | ProteinID:AAF82142.1 | ProteinID:AEE29353.1 | EMBL:AK227390 |
| ArrayExpress:AT1G15720 | EnsemblPlantsGene:AT1G15720 | RefSeq:AT1G15720 | TAIR:AT1G15720 | RefSeq:AT1G15720-TAIR-G | EnsemblPlants:AT1G15720.1 |
| TAIR:AT1G15720.1 | EMBL:AY519536 | Unigene:At.48193 | EMBL:BT003085 | GO:GO:0000783 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003691 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031627 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| RefSeq:NP_173024.1 | PFAM:PF00249 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS51294 | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF39 | UniProt:Q9LMR2 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | Symbol:TRFL5 |
| UniParc:UPI000000BED5 | SEG:seg | : | : | : | : |
Description
TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
Coordinates
chr1:+:5406025..5407486
Molecular Weight (calculated)
44972.6 Da
IEP (calculated)
6.061
GRAVY (calculated)
-0.694
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.