Factsheet for TraesCS2B01G094500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G308600.1
TraesCS7B01G208700.1
TraesCS7D01G305300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	TraesCS7A01G308600.1	AT5G54810.1	21798944
AT1G15720.1	TraesCS7B01G208700.1	AT5G54810.1	21798944
AT1G15720.1	TraesCS7D01G305300.1	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G079700.1	Wheat	plastid	91.53	91.78
TraesCS2D01G077000.1	Wheat	nucleus	84.92	88.19
HORVU2Hr1G013090.1	Barley	nucleus	83.6	83.38
Os07t0695900-01	Rice	nucleus	51.85	51.04
CDY32708	Canola	nucleus	5.56	28.0
TraesCS7B01G047400.1	Wheat	nucleus	29.1	26.38
CDY32710	Canola	cytosol	4.23	25.0
KRH41741	Soybean	nucleus	8.47	24.62
OQU91491	Sorghum	nucleus	37.83	24.32
Zm00001d013827_P001	Maize	extracellular, nucleus	38.36	24.25
GSMUA_Achr9P30360_001	Banana	nucleus	16.93	20.65
CDY41924	Canola	nucleus	20.63	20.21
CDY43862	Canola	nucleus	20.9	19.7
Bra020373.1-P	Field mustard	nucleus	14.29	19.35
Bra039470.1-P	Field mustard	nucleus	20.11	19.29
AT1G15720.1	Thale cress	nucleus	19.84	19.23
CDY32992	Canola	nucleus	21.96	19.12
CDY27805	Canola	nucleus	19.84	19.04
GSMUA_Achr4P27790_001	Banana	nucleus	14.02	19.0
KRH63009	Soybean	nucleus	21.43	18.49
KRG98140	Soybean	nucleus	21.69	17.52
KRH54884	Soybean	nucleus	22.75	17.44
Bra002659.1-P	Field mustard	nucleus	19.84	17.32
VIT_06s0004g08050.t01	Wine grape	nucleus	21.69	17.12
KRH30478	Soybean	nucleus	21.16	17.06
AT5G58340.1	Thale cress	nucleus	19.84	16.74
Solyc06g082510.2.1	Tomato	nucleus	19.58	15.85
PGSC0003DMT400078128	Potato	nucleus	18.25	14.87

Protein Annotations

EnsemblPlants:TraesCS2B01G094500.1	EnsemblPlantsGene:TraesCS2B01G094500	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	ncoils:Coil
PANTHER:PTHR21717	PANTHER:PTHR21717:SF32	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	TIGR:cd11660	MapMan:15.5.2.2	:	:	:

Description

No Description!

Coordinates

chr2B:+:54553405..54555597

Molecular Weight (calculated)

41190.3 Da

IEP (calculated)

7.849

GRAVY (calculated)

-0.732

Length

378 amino acids

Sequence
(BLAST)

001: MVARATQQAS TTMPPLAAAD AFRVLEFVAG NRRVPHSLFA GLLAALPPVS PHTSPRLRKA VALRALDAAL SGSDADGSGE LLRKARDVLA DPAIAACFPE
101: HLAAVGDDVA ALRRLVDAEW ESLPPSALEL EADRIAGAGA LDTWANADHD KRKKLRRLVG EATEREILGK LGQDPSKAPQ VDEAANAPST SGTNEGDRAQ
201: QDDEAHLGRE KGEANHAQED CARHQQEPVE RTTDARVPEK PVASAAVKGK EQATSSHVTG QAAPDHNKSH PVAGSKPSLM ERKPSAIVYQ WDDSGDSDSE
301: RPPHQRRLPT YERKMRPPPA IPHKTRKKWT EIQERTLIEG VAKYGRGNWK DIKIAYPDVF QDRSTVDMKD KFRNLGRH

Best Arabidopsis Sequence Match ( AT1G15720.1 )
(BLAST)

001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ

Arabidopsis Description

TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.