Factsheet for TraesCS2D01G077000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G308600.1
TraesCS7B01G208700.1
TraesCS7D01G305300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	TraesCS7A01G308600.1	AT5G54810.1	21798944
AT1G15720.1	TraesCS7B01G208700.1	AT5G54810.1	21798944
AT1G15720.1	TraesCS7D01G305300.1	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G079700.1	Wheat	plastid	90.11	87.0
TraesCS2B01G094500.1	Wheat	plastid	88.19	84.92
HORVU2Hr1G013090.1	Barley	nucleus	81.87	78.63
Os07t0695900-01	Rice	nucleus	51.92	49.22
CDY32708	Canola	nucleus	6.04	29.33
KRH41741	Soybean	nucleus	9.07	25.38
CDY32710	Canola	cytosol	4.4	25.0
TraesCS7D01G146500.1	Wheat	nucleus	28.3	24.76
Zm00001d013827_P001	Maize	extracellular, nucleus	39.56	24.08
OQU91491	Sorghum	nucleus	38.46	23.81
CDY41924	Canola	nucleus	22.25	20.98
GSMUA_Achr9P30360_001	Banana	nucleus	16.76	19.68
KRH63009	Soybean	nucleus	23.63	19.63
Bra020373.1-P	Field mustard	nucleus	14.84	19.35
Bra039470.1-P	Field mustard	nucleus	20.6	19.04
AT1G15720.1	Thale cress	nucleus	20.33	18.97
CDY43862	Canola	nucleus	20.88	18.95
CDY27805	Canola	nucleus	20.33	18.78
CDY32992	Canola	nucleus	21.7	18.2
KRH54884	Soybean	nucleus	24.18	17.85
GSMUA_Achr4P27790_001	Banana	nucleus	13.19	17.2
KRH30478	Soybean	nucleus	21.43	16.63
Bra002659.1-P	Field mustard	nucleus	19.78	16.63
KRG98140	Soybean	nucleus	21.15	16.45
VIT_06s0004g08050.t01	Wine grape	nucleus	21.15	16.08
AT5G58340.1	Thale cress	nucleus	19.23	15.62
Solyc06g082510.2.1	Tomato	nucleus	18.41	14.35
PGSC0003DMT400078128	Potato	nucleus	17.03	13.36

Protein Annotations

EnsemblPlants:TraesCS2D01G077000.1	EnsemblPlantsGene:TraesCS2D01G077000	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR21717
PANTHER:PTHR21717:SF32	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd11660	MapMan:15.5.2.2	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:32806846..32809320

Molecular Weight (calculated)

39905.9 Da

IEP (calculated)

8.879

GRAVY (calculated)

-0.758

Length

364 amino acids

Sequence
(BLAST)

001: MPPLAAADAF RVLEFVAGNR RVPHSLLAGL LAALPPVSPH TSPRLRKAFA LRALDTALSG SYADGSGEPL RKARDVLADP GVAACFPDQL AVVRDDVAAL
101: RRLVDAEWES LPPSELELEA DRIAGAGALD TWANADQGTR KKLRRLVGES TEREILGKLG QDPSKAPQVD EAANAPSTSG ANEDVGAQND EVHLGREKGE
201: VNHAHEDYAR HQQKPVERTT DARIPEKPVT GAAIKGKEQA TSSGVTGQAA PDRDKSHPVT GSKPGLMERK PSAIVYQWDS GDSDSERPPH QRRLPNYERK
301: MRPPPAVPYK TRKKWTEIQE RTLIEGVDKY GRGNWKDIKI AYPDVFQDRS TVDMKDKFRN LGRH

Best Arabidopsis Sequence Match ( AT1G15720.1 )
(BLAST)

001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ

Arabidopsis Description

TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.