Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P07140_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | GSMUA_Achr4P07140_001 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41741 | Soybean | nucleus | 14.34 | 30.77 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 24.73 | 22.26 |
| CDY32708 | Canola | nucleus | 5.02 | 18.67 |
| Os07t0695900-01 | Rice | nucleus | 23.66 | 17.19 |
| EER93019 | Sorghum | nucleus | 25.81 | 16.78 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 25.09 | 16.67 |
| KRH63009 | Soybean | nucleus | 25.45 | 16.21 |
| Zm00001d036356_P005 | Maize | nucleus | 23.3 | 14.94 |
| KRH30478 | Soybean | nucleus | 25.09 | 14.93 |
| KRH54884 | Soybean | nucleus | 26.16 | 14.81 |
| KRG98140 | Soybean | nucleus | 24.73 | 14.74 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 21.86 | 14.66 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 21.86 | 14.63 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 21.86 | 14.63 |
| HORVU2Hr1G013090.1 | Barley | nucleus | 19.71 | 14.51 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 24.73 | 14.4 |
| Solyc06g082510.2.1 | Tomato | nucleus | 24.01 | 14.35 |
| TraesCS2B01G094500.1 | Wheat | plastid | 19.0 | 14.02 |
| Bra020373.1-P | Field mustard | nucleus | 13.98 | 13.98 |
| Zm00001d007141_P003 | Maize | nucleus | 21.51 | 13.67 |
| Zm00001d045123_P001 | Maize | nucleus | 19.71 | 13.65 |
| TraesCS2A01G079700.1 | Wheat | plastid | 18.28 | 13.53 |
| PGSC0003DMT400078128 | Potato | nucleus | 22.22 | 13.36 |
| TraesCS2D01G077000.1 | Wheat | nucleus | 17.2 | 13.19 |
| OQU93426 | Sorghum | cytosol | 16.49 | 12.89 |
| CDY43862 | Canola | nucleus | 16.49 | 11.47 |
| CDY27805 | Canola | nucleus | 15.77 | 11.17 |
| Bra039470.1-P | Field mustard | nucleus | 15.41 | 10.91 |
| CDY41924 | Canola | nucleus | 14.7 | 10.62 |
| CDY32992 | Canola | nucleus | 16.49 | 10.6 |
| AT1G15720.1 | Thale cress | nucleus | 14.7 | 10.51 |
| Os06t0181300-01 | Rice | nucleus | 12.54 | 10.45 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 24.73 | 10.3 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 24.73 | 10.3 |
| OQU91491 | Sorghum | nucleus | 20.43 | 9.69 |
| CDY32710 | Canola | cytosol | 2.15 | 9.38 |
| AT5G58340.1 | Thale cress | nucleus | 15.05 | 9.38 |
| Bra002659.1-P | Field mustard | nucleus | 14.34 | 9.24 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 19.0 | 8.86 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr4G27790_001 | EnsemblPlants:GSMUA_Achr4P27790_001 | EnsemblPlants:GSMUA_Achr4T27790_001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0SSP1 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF39 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00029602D2 | SEG:seg | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G27790_001]
Coordinates
chr4:-:26489661..26492337
Molecular Weight (calculated)
31856.6 Da
IEP (calculated)
6.412
GRAVY (calculated)
-0.856
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAVVDPAL RAQLARRETK EAALVAVRVC LEEMEKEMGP TFLEAAADAI VSCDCETHRS LVVLSDKLRA FRSIGLESVE RGVEIGHLPS KIDRARSTVE
101: GGEGIKLNDR NIEKDQMRTD QEQGYSVDKN SMSCELQEVS DHKSCDNNYD DVPQSGQMDP VPPDPKDKPS LMDRNATAHT FEWDSIPTHY GKSPNMKKEM
201: DYFSSMNSKS SSSLNETKEY VLRRRKRKWN SLEEETLRKA VARYGAGNWK LIKGCHPEIF ERRTEVDLKD KWRNMTRHM
101: GGEGIKLNDR NIEKDQMRTD QEQGYSVDKN SMSCELQEVS DHKSCDNNYD DVPQSGQMDP VPPDPKDKPS LMDRNATAHT FEWDSIPTHY GKSPNMKKEM
201: DYFSSMNSKS SSSLNETKEY VLRRRKRKWN SLEEETLRKA VARYGAGNWK LIKGCHPEIF ERRTEVDLKD KWRNMTRHM
001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.