Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d024702_P001 | |
| Zm00001d049610_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | Zm00001d024702_P001 | AT5G54810.1 | 21798944 |
| AT1G15720.1 | Zm00001d049610_P001 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036356_P005 | Maize | nucleus | 87.7 | 88.51 |
| Zm00001d045123_P001 | Maize | nucleus | 65.15 | 70.97 |
| EER93019 | Sorghum | nucleus | 69.25 | 70.86 |
| OQU93426 | Sorghum | cytosol | 56.72 | 69.75 |
| Os06t0181300-01 | Rice | nucleus | 48.29 | 63.28 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 59.23 | 62.35 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 58.31 | 61.54 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 57.63 | 60.67 |
| KRH41741 | Soybean | nucleus | 10.02 | 33.85 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 27.56 | 25.26 |
| KRH30478 | Soybean | nucleus | 25.51 | 23.88 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 16.63 | 23.55 |
| KRH63009 | Soybean | nucleus | 23.46 | 23.52 |
| KRG98140 | Soybean | nucleus | 24.6 | 23.08 |
| CDY41924 | Canola | nucleus | 19.82 | 22.54 |
| Solyc06g082510.2.1 | Tomato | nucleus | 23.69 | 22.27 |
| Bra020373.1-P | Field mustard | nucleus | 14.12 | 22.22 |
| PGSC0003DMT400078128 | Potato | nucleus | 23.01 | 21.77 |
| KRH54884 | Soybean | nucleus | 24.37 | 21.7 |
| CDY43862 | Canola | nucleus | 19.82 | 21.7 |
| AT1G15720.1 | Thale cress | nucleus | 19.13 | 21.54 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 13.67 | 21.51 |
| CDY32992 | Canola | nucleus | 21.18 | 21.43 |
| CDY27805 | Canola | nucleus | 18.91 | 21.07 |
| Bra039470.1-P | Field mustard | nucleus | 18.91 | 21.07 |
| AT5G58340.1 | Thale cress | nucleus | 20.5 | 20.09 |
| Bra002659.1-P | Field mustard | nucleus | 19.59 | 19.86 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 21.64 | 15.89 |
| CDY32708 | Canola | nucleus | 2.51 | 14.67 |
| CDY32710 | Canola | cytosol | 2.05 | 14.06 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | UniProt:A0A1D6F475 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | ProteinID:ONM26129.1 | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF39 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0008437607 | EnsemblPlantsGene:Zm00001d007141 | EnsemblPlants:Zm00001d007141_P003 | EnsemblPlants:Zm00001d007141_T003 | SEG:seg | : |
Description
TRF-like 5
Coordinates
chr2:+:223272628..223275423
Molecular Weight (calculated)
47160.1 Da
IEP (calculated)
6.610
GRAVY (calculated)
-0.322
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRLTPAYVT LILDHVLGDP SIPTAAAIAL IAGLPSPSDP TPRLRRGVLL RRLAADPVSE SSLETLHLLA SLPPCASPIA AAHIAVAAFL AASAPDFDAV
101: ARALFARPDG RARQAVHGGG SPALASDDAI VTVDQFEAAV GKSSSQTILR GLWGNRAAVE ERVQELLAAE WAAIGPSRLE ALAMRIVGDG AVETWAAADE
201: AMRANLRILG DDSFFGWILQ QHCDQETTGE EKTREILDKL EKSTCSTNPI STPAVEKVMN ALKASCADLH SIVEDPLPAA KAVADELLAA RMEKRVSLNA
301: EVGGQPTTCG AAGPSIHNDK DNGPGIGKPH SLMERNATAR TSQWEESHGL DGSEPPSPPR PRLPSPRRLP PSPLPPPGNK NTKRRKTRRW SLFEEETLRK
401: GVEEYGVGNW RDILDNNAEA LTGRTPVDLK DKWRNMLFR
101: ARALFARPDG RARQAVHGGG SPALASDDAI VTVDQFEAAV GKSSSQTILR GLWGNRAAVE ERVQELLAAE WAAIGPSRLE ALAMRIVGDG AVETWAAADE
201: AMRANLRILG DDSFFGWILQ QHCDQETTGE EKTREILDKL EKSTCSTNPI STPAVEKVMN ALKASCADLH SIVEDPLPAA KAVADELLAA RMEKRVSLNA
301: EVGGQPTTCG AAGPSIHNDK DNGPGIGKPH SLMERNATAR TSQWEESHGL DGSEPPSPPR PRLPSPRRLP PSPLPPPGNK NTKRRKTRRW SLFEEETLRK
401: GVEEYGVGNW RDILDNNAEA LTGRTPVDLK DKWRNMLFR
001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.