CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98855
KRH37954
KRH46102

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	KRG98855	AT5G54810.1	21798944
AT1G15720.1	KRH37954	AT5G54810.1	21798944
AT1G15720.1	KRH46102	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54884	Soybean	nucleus	75.57	67.14
KRH41741	Soybean	nucleus	19.41	65.38
VIT_06s0004g08050.t01	Wine grape	nucleus	36.99	33.82
KRG98140	Soybean	nucleus	34.7	32.48
KRH30478	Soybean	nucleus	32.65	30.49
PGSC0003DMT400078128	Potato	nucleus	31.74	29.96
Solyc06g082510.2.1	Tomato	nucleus	30.82	28.91
Bra039470.1-P	Field mustard	nucleus	23.06	25.63
CDY27805	Canola	nucleus	23.06	25.63
GSMUA_Achr4P27790_001	Banana	nucleus	16.21	25.45
CDY41924	Canola	nucleus	22.37	25.39
GSMUA_Achr9P30360_001	Banana	nucleus	17.81	25.16
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	23.74	24.76
OQU93426	Sorghum	cytosol	20.09	24.65
Zm00001d045123_P001	Maize	nucleus	22.6	24.57
CDY43862	Canola	nucleus	22.37	24.44
AT1G15720.1	Thale cress	nucleus	21.69	24.36
TraesCS7B01G047400.1	Wheat	nucleus	23.06	24.22
TraesCS7A01G145200.1	Wheat	nucleus	23.06	24.22
CDY32708	Canola	nucleus	4.11	24.0
TraesCS7D01G146500.1	Wheat	nucleus	22.6	23.8
TraesCS2D01G077000.1	Wheat	nucleus	19.63	23.63
Zm00001d007141_P003	Maize	nucleus	23.52	23.46
Zm00001d036356_P005	Maize	nucleus	23.29	23.45
EER93019	Sorghum	nucleus	22.83	23.31
CDY32992	Canola	nucleus	23.06	23.27
Bra020373.1-P	Field mustard	nucleus	14.38	22.58
TraesCS2A01G079700.1	Wheat	plastid	19.18	22.28
CDY32710	Canola	cytosol	3.2	21.88
Bra002659.1-P	Field mustard	nucleus	21.46	21.71
TraesCS2B01G094500.1	Wheat	plastid	18.49	21.43
AT5G58340.1	Thale cress	nucleus	21.92	21.43
HORVU2Hr1G013090.1	Barley	nucleus	18.26	21.11
Os07t0695900-01	Rice	nucleus	18.49	21.09
Os06t0181300-01	Rice	nucleus	14.61	19.1
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	23.74	15.52
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	23.74	15.52
OQU91491	Sorghum	nucleus	17.81	13.27
Zm00001d013827_P001	Maize	extracellular, nucleus	17.35	12.71

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100811657	MapMan:15.5.2.2	UniProt:A0A0R0K8U1	EMBL:ACUP02002546	EnsemblPlantsGene:GLYMA_04G148800
GO:GO:0000783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf
InterPro:IPR017930	EnsemblPlants:KRH63009	ProteinID:KRH63009	ProteinID:KRH63009.1	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF39	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0003DEB21F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:31131125..31134153

Molecular Weight (calculated)

49805.2 Da

IEP (calculated)

5.290

GRAVY (calculated)

-0.454

Length

438 amino acids

Sequence
(BLAST)

001: MEGGDVGHWV LEFLLRARYP VVSSNLLKKV LRIVPLSDFD SRLQKTLLLR TLQDHLFAVS VPESVLETLE LLEELHRRDD GALITAAAMS AAYCAIAVDC
101: TLKHLLVELH NNPAYLGAVN RIWRGRVRHM SGSREGSLLL SLELERWRTD IETSLLDSLV RERLASIDTR RDAVVKLRDY LMEAWTDLGP SFLELAALAQ
201: INKNALAVNY LEDSQQPERE IEKCTAAPAE EVHTSTDAEV QKVGECGSVE LQKLAEDSLL NSLEVNEEAP IESRDADVPC PLVINNNNNE ADLMEKDQTS
301: IPHNHDHKSS LMERNSTARI YEWDDSIDGL EDGTSDHATR FNLPSPKWRE VSPLDKYKPA SITKRRKVKK WSQLEEETLK TAVDKFGRGN WKLILDSHKD
401: IFEERTEVDL KDKWRNMRLI ILVHTTQYKP STLKTAQA

Best Arabidopsis Sequence Match ( AT5G58340.1 )
(BLAST)

001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.