Factsheet for HORVU2Hr1G013090.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G073460.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	HORVU7Hr1G073460.3	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G079700.1	Wheat	plastid	83.64	84.08
TraesCS2B01G094500.1	Wheat	plastid	83.38	83.6
TraesCS2D01G077000.1	Wheat	nucleus	78.63	81.87
Os07t0695900-01	Rice	nucleus	51.72	51.04
CDY32708	Canola	nucleus	5.28	26.67
OQU91491	Sorghum	nucleus	39.31	25.34
Zm00001d013827_P001	Maize	extracellular, nucleus	37.73	23.91
KRH41741	Soybean	nucleus	8.18	23.85
CDY32710	Canola	cytosol	3.96	23.44
GSMUA_Achr9P30360_001	Banana	nucleus	17.15	20.97
CDY41924	Canola	nucleus	21.11	20.73
Bra039470.1-P	Field mustard	nucleus	20.58	19.8
GSMUA_Achr4P27790_001	Banana	nucleus	14.51	19.71
CDY27805	Canola	nucleus	20.32	19.54
Bra020373.1-P	Field mustard	nucleus	13.72	18.64
AT1G15720.1	Thale cress	nucleus	19.0	18.46
KRH63009	Soybean	nucleus	21.11	18.26
CDY43862	Canola	nucleus	19.0	17.96
CDY32992	Canola	nucleus	19.79	17.28
KRH54884	Soybean	nucleus	22.43	17.24
VIT_06s0004g08050.t01	Wine grape	nucleus	21.64	17.12
KRG98140	Soybean	nucleus	20.05	16.24
KRH30478	Soybean	nucleus	20.05	16.2
Bra002659.1-P	Field mustard	nucleus	17.94	15.7
AT5G58340.1	Thale cress	nucleus	18.47	15.62
Solyc06g082510.2.1	Tomato	nucleus	17.68	14.35
PGSC0003DMT400078128	Potato	nucleus	16.62	13.58

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	UniProt:A0A287H484	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	EnsemblPlantsGene:HORVU2Hr1G013090	EnsemblPlants:HORVU2Hr1G013090.1	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF32	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000B47318A	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:28615380..28618275

Molecular Weight (calculated)

40982.9 Da

IEP (calculated)

5.891

GRAVY (calculated)

-0.749

Length

379 amino acids

Sequence
(BLAST)

001: GEQDGGPDGG PSATMPPLTA ADAFLVLEFV AGNRLLPHSL FSGLLAALPS VSPRTSTRLR KAVALRALEA ALSGSDADGS GELPRKARDV LDDPGVAAFF
101: PDHLAVVRDD VAALRRLVDA EWAGLPPSAL ELEADRIAGA GALDTWANAD QDTRKILRLL GESTEREILG KLGEGPSKAP QVDEAANAPG TSGANEDGRA
201: QQDDEANLGR GKGEGNHAQE DCARHQQEPV ERTTDARIPE KPVPSAAIKG KEQATSSHVT GQAAPDHNKS HPVTGFKPSL MERKPSAIVY EWDDSGDSDS
301: ERPPRKRQLP TYERKMRPPP GVPHKTRKKW TEMQEKTLIE GVENYGKGNW KEIKIAYPDV FQDRSTVDMK DKFRNMGRH

Best Arabidopsis Sequence Match ( AT1G15720.1 )
(BLAST)

001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ

Arabidopsis Description

TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.