CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98855
KRH37954
KRH46102

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	KRG98855	AT5G54810.1	21798944
AT1G15720.1	KRH37954	AT5G54810.1	21798944
AT1G15720.1	KRH46102	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98140	Soybean	nucleus	81.45	81.62
VIT_06s0004g08050.t01	Wine grape	nucleus	37.31	36.53
CDY32710	Canola	cytosol	4.48	32.81
KRH63009	Soybean	nucleus	30.49	32.65
Solyc06g082510.2.1	Tomato	nucleus	30.49	30.62
PGSC0003DMT400078128	Potato	nucleus	30.06	30.39
KRH54884	Soybean	nucleus	31.77	30.22
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	26.87	30.0
TraesCS7B01G047400.1	Wheat	nucleus	25.8	29.02
TraesCS7D01G146500.1	Wheat	nucleus	24.95	28.12
TraesCS7A01G145200.1	Wheat	nucleus	24.95	28.06
EER93019	Sorghum	nucleus	24.95	27.27
KRH41741	Soybean	nucleus	7.46	26.92
Zm00001d045123_P001	Maize	nucleus	23.03	26.8
Os06t0181300-01	Rice	nucleus	18.98	26.57
CDY41924	Canola	nucleus	21.32	25.91
OQU93426	Sorghum	cytosol	19.62	25.77
Zm00001d007141_P003	Maize	nucleus	23.88	25.51
CDY43862	Canola	nucleus	21.75	25.44
AT1G15720.1	Thale cress	nucleus	21.11	25.38
CDY27805	Canola	nucleus	21.32	25.38
Bra039470.1-P	Field mustard	nucleus	21.32	25.38
GSMUA_Achr4P27790_001	Banana	nucleus	14.93	25.09
Zm00001d036356_P005	Maize	nucleus	23.03	24.83
CDY32992	Canola	nucleus	22.81	24.65
Bra002659.1-P	Field mustard	nucleus	21.32	23.09
Bra020373.1-P	Field mustard	nucleus	13.22	22.22
Os07t0695900-01	Rice	nucleus	18.12	22.14
AT5G58340.1	Thale cress	nucleus	21.11	22.1
GSMUA_Achr9P30360_001	Banana	nucleus	14.5	21.94
TraesCS2D01G077000.1	Wheat	nucleus	16.63	21.43
TraesCS2B01G094500.1	Wheat	plastid	17.06	21.16
TraesCS2A01G079700.1	Wheat	plastid	16.63	20.69
HORVU2Hr1G013090.1	Barley	nucleus	16.2	20.05
CDY32708	Canola	nucleus	2.99	18.67
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	26.65	18.66
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	26.65	18.66
Zm00001d013827_P001	Maize	extracellular, nucleus	15.78	12.37
OQU91491	Sorghum	nucleus	15.14	12.07

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EMBL:ACUP02007020	EnsemblPlantsGene:GLYMA_11G186600	GO:GO:0000783	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7LR44
EnsemblPlants:KRH30478	ProteinID:KRH30478	ProteinID:KRH30478.1	ProteinID:KRH30479.1	ProteinID:KRH30480.1	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF39	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000233C697	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:25636060..25641324

Molecular Weight (calculated)

52932.4 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.650

Length

469 amino acids

Sequence
(BLAST)

001: MDSDISQWVT EFLLRSSVPD SLIQKTLAAL PLSTASPRLK KTLLLRTLQT LLRTATLSET ALDILELLEP SAPVSDAHRR AYCAVAVECT VKYLAACPED
101: IDGEYAGAVR RIWRGRVSAL KARWSRLVSG ELARWRDVVE DAFGDSRARQ RLVGLNSRRD AMKEVRVFLK EAWGAMGPSF LETVAAKEKN KDEGARDNDD
201: NDNICDDHDD GACMEDVAMH GENQEPLEES VDANQEVGGF DLSPRRDKAI PKRNSQLKHK HSAFRASHRG RGVEISSPKE VKATKSWSKH DPVPSAEVKK
301: VRESLKSSSL ELRALVKDPL PHALHISDVV RSKLATSDTK TEPLIENQHE DVEVQDPDVC QSIVPFQPND VNLGKKSFVH CSNIHQPYLM EQNISARTFE
401: WEDSVDNSPQ ARQPRRRKRK WSSLEEETLR AGVKMFGEGN WASIRSFYSN VFENRSGVDL KDKWRNMIR

Best Arabidopsis Sequence Match ( AT5G58340.1 )
(BLAST)

001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.