CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, peroxisome, golgi, plasma membrane, vacuole, endoplasmic reticulum, mitochondrion, plastid

Predictor Summary:

nucleus 2
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, peroxisome, plastid, secretory
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	EES13315	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	61.49	98.1
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	97.91	97.91
Zm00001d045123_P001	Maize	nucleus	45.22	75.19
EER93019	Sorghum	nucleus	47.16	73.66
OQU93426	Sorghum	cytosol	38.36	71.99
Os06t0181300-01	Rice	nucleus	34.18	68.36
TraesCS7A01G145200.1	Wheat	nucleus	40.75	65.47
TraesCS7B01G047400.1	Wheat	nucleus	40.6	65.23
TraesCS7D01G146500.1	Wheat	nucleus	40.3	64.9
KRH41741	Soybean	nucleus	6.12	31.54
KRH30478	Soybean	nucleus	18.66	26.65
KRG98140	Soybean	nucleus	18.36	26.28
VIT_06s0004g08050.t01	Wine grape	nucleus	18.06	25.26
CDY41924	Canola	nucleus	14.33	24.87
GSMUA_Achr4P27790_001	Banana	nucleus	10.3	24.73
Bra020373.1-P	Field mustard	nucleus	10.15	24.37
CDY32708	Canola	nucleus	2.69	24.0
KRH63009	Soybean	nucleus	15.52	23.74
AT1G15720.1	Thale cress	nucleus	13.73	23.59
Solyc06g082510.2.1	Tomato	nucleus	16.42	23.55
CDY32710	Canola	cytosol	2.24	23.44
GSMUA_Achr9P30360_001	Banana	nucleus	10.75	23.23
CDY43862	Canola	nucleus	13.73	22.94
CDY27805	Canola	nucleus	13.13	22.34
Bra039470.1-P	Field mustard	nucleus	13.13	22.34
PGSC0003DMT400078128	Potato	nucleus	15.07	21.77
CDY32992	Canola	nucleus	13.88	21.43
KRH54884	Soybean	nucleus	15.52	21.1
AT5G58340.1	Thale cress	nucleus	13.88	20.76
Bra002659.1-P	Field mustard	nucleus	12.84	19.86
OQU91491	Sorghum	nucleus	16.72	19.05

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	Gene3D:3.30.9.10	Gene3D:3.50.50.60	UniProt:A0A1W0VRT5	InterPro:FAD-dep_OxRdtase
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:IPR036188	InterPro:Myb_dom	EnsemblPlants:OQU75965	ProteinID:OQU75965	ProteinID:OQU75965.1	PFAM:PF00249
PFAM:PF01266	PFscan:PS51294	PANTHER:PTHR13847	PANTHER:PTHR13847:SF248	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3010G063566	SUPFAM:SSF46689	UniParc:UPI0009DC8322	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:5024340..5030162

Molecular Weight (calculated)

72203.9 Da

IEP (calculated)

6.030

GRAVY (calculated)

-0.230

Length

670 amino acids

Sequence
(BLAST)

001: MPRVTPVGAS LILEHVLADP SVPAAVVNKL LVALPVPSHP TPRLRRAVLL RRLAADPVSE SSLDTLQLLA ALPAPASPIA AAHIAVAAYL AVSASDFDDA
101: AGALFARPNG RVRLAVDEGG SSALASDEIM TTVDQFEAAV GNSFSQAVLR GLWGDRSATE ERVRDLLAAE WAAIGPSLLV QAAERIVGDG AVETWRAADE
201: ATRAKLRILA GEERTHEILS KLEEPTSSAN PISTPAVEKV INSLKTSCAE LHSVVEDPLP AAKAVADEVL AARMEKSVSL DAEEARGQPT TCGTAGPSAP
301: NDKGKGPSTG KPHSLMDWNP TARTFQWEES PGPESSEPSL RRPHLPSPRR APVSPLPPGE NKNRRRRARK WCLLEEEALR QGVEQYGSGN WKDILNNNPD
401: VFIGRTPVDL KDKWRNMINR YRGIVRPPTT EKAADILLEA LFSACQNLAD EASSLPSEQK EFKLYKQHVD DLHHLAGNYD SVIVCLGAKV RSLPELANKL
501: PLRTCRGVIA EFKLPSDTIE EYGSQSPSIL SDAWLAFQGP RSVSIGSTWQ WKSENDSSTV SDEESLTAME ELLPKASGVY PRINKWDFVG ARAGIRAMPP
601: LTANGSLPLL GCLDDLLGKK SNCTFWIVGG LGARGLLYHG LVGKLTAKAV ISCDENIIPS EFTCWNTIKP

Best Arabidopsis Sequence Match ( AT2G22650.1 )
(BLAST)

001: MITAVLHPCS SASLSLPNRP PLRYAILGAG FAGISVAWHL LKESPKELRL SVDVYDEVGI GGGASGVSGG LLHPYSPKGK LLWHGAECWR ECLELLNVAE
101: TAASSSYQST ENRDFSESFG NFMVRRRGIL RPATNAKTLD LMSDNARNCL ASCVVETIDK DGAQNLVPNL YLPLNCAFYF PGAMNVNPHR YLQALFLACQ
201: SSAKTSLGRK NITLVNKSIT DVLELEGGYD AVVICLGSKV DFLPGLTGKL PLRTCRGVIT HMQLHESARG SYPDDGPSIL SDAWLAVQGP RNLHMGSTWE
301: WQSRNYSSDV PAEEASRALN ELLPKASAVY PDIEKWEFAG ARAGLRAMPP VTSHGSLPLL GCVNQLIGAG QFCNFWVFSG LGSRGLLYHA WLGKLMSKAV
401: LSCNEELLPS ELTSWKKNRQ

Arabidopsis Description

FAD-dependent oxidoreductase family protein [Source:UniProtKB/TrEMBL;Acc:Q5S4X7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.