Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P07140_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | GSMUA_Achr4P07140_001 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41741 | Soybean | nucleus | 18.06 | 43.08 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 22.26 | 24.73 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 29.03 | 18.79 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 25.16 | 18.75 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 24.84 | 18.47 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 24.19 | 17.99 |
| KRH54884 | Soybean | nucleus | 28.39 | 17.85 |
| KRH63009 | Soybean | nucleus | 25.16 | 17.81 |
| EER93019 | Sorghum | nucleus | 24.19 | 17.48 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 23.55 | 17.38 |
| HORVU2Hr1G013090.1 | Barley | nucleus | 20.97 | 17.15 |
| TraesCS2B01G094500.1 | Wheat | plastid | 20.65 | 16.93 |
| TraesCS2D01G077000.1 | Wheat | nucleus | 19.68 | 16.76 |
| Os07t0695900-01 | Rice | nucleus | 20.65 | 16.67 |
| Zm00001d007141_P003 | Maize | nucleus | 23.55 | 16.63 |
| TraesCS2A01G079700.1 | Wheat | plastid | 20.0 | 16.45 |
| Zm00001d036356_P005 | Maize | nucleus | 22.9 | 16.32 |
| OQU93426 | Sorghum | cytosol | 17.74 | 15.41 |
| Solyc06g082510.2.1 | Tomato | nucleus | 22.9 | 15.2 |
| Zm00001d045123_P001 | Maize | nucleus | 19.68 | 15.14 |
| KRG98140 | Soybean | nucleus | 22.26 | 14.74 |
| Bra020373.1-P | Field mustard | nucleus | 13.23 | 14.7 |
| CDY32708 | Canola | nucleus | 3.55 | 14.67 |
| PGSC0003DMT400078128 | Potato | nucleus | 21.94 | 14.66 |
| KRH30478 | Soybean | nucleus | 21.94 | 14.5 |
| CDY32710 | Canola | cytosol | 2.9 | 14.06 |
| AT1G15720.1 | Thale cress | nucleus | 16.13 | 12.82 |
| CDY43862 | Canola | nucleus | 16.45 | 12.72 |
| CDY27805 | Canola | nucleus | 15.81 | 12.44 |
| Bra039470.1-P | Field mustard | nucleus | 15.48 | 12.18 |
| CDY41924 | Canola | nucleus | 15.16 | 12.18 |
| CDY32992 | Canola | nucleus | 16.77 | 11.98 |
| AT5G58340.1 | Thale cress | nucleus | 15.81 | 10.94 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 23.55 | 10.9 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 23.23 | 10.75 |
| Bra002659.1-P | Field mustard | nucleus | 14.19 | 10.16 |
| OQU91491 | Sorghum | nucleus | 18.39 | 9.69 |
| Os06t0181300-01 | Rice | nucleus | 10.32 | 9.55 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 15.48 | 8.03 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr9G30360_001 | EnsemblPlants:GSMUA_Achr9P30360_001 | EnsemblPlants:GSMUA_Achr9T30360_001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0U4U3 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF39 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000295CD74 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G30360_001]
Coordinates
chr9:+:33651434..33655256
Molecular Weight (calculated)
34332.6 Da
IEP (calculated)
8.827
GRAVY (calculated)
-0.820
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MENEIARKQN AVVHLGKPTD KFDPMSAPEV EKVANALKSS CVDLHKVVVD PLPDAVMKAT EVLKNRSFGM TNDVEELEIQ RQVGASGPVS AAKNGSKDNG
101: ADEIVEQSKV GASGQVSAVK TGSKDNGVDE IVEQSKKNDA LDVDGSMQQR KDDAVQSNRE PSVEKQSDGI DNRVQAAPTI HAEMKGTGIS NTDGVQKRSL
201: MDRNPTAHTF EWGEDPIESS SDKSPAAEKI TLPSPKRKKT CSPLTIMENK KLVIRRKRKR WSSLEEETLR KAVRKHGVGN WKFILSCFSK IFEDRTEVDL
301: KDKWRNMTRH
101: ADEIVEQSKV GASGQVSAVK TGSKDNGVDE IVEQSKKNDA LDVDGSMQQR KDDAVQSNRE PSVEKQSDGI DNRVQAAPTI HAEMKGTGIS NTDGVQKRSL
201: MDRNPTAHTF EWGEDPIESS SDKSPAAEKI TLPSPKRKKT CSPLTIMENK KLVIRRKRKR WSSLEEETLR KAVRKHGVGN WKFILSCFSK IFEDRTEVDL
301: KDKWRNMTRH
001: MGAPKLKWTP EEETALKAGV LKHGTGKWRT ILSDPVYSTI LKSRSNVDLK DKWRNISVTA LWGSRKKAKL ALKRTPLSGS RQDDNATAIT IVSLANGDVG
101: GQQIDAPSPP AGSCEPPRPS TSVDKIILEA ITSLKRPFGP DGKSILMYIE ENFKMQPDMK RLVTSRLKYL TNVGTLVKKK HKYRISQNYM AEGEGQRSPQ
201: LLLEGNKENT PKPEENGVKN LTKSQVGGEV MIMGMTEKEA AAAAARAVAE AEFAMAEAEE AAREADKAEA EAEAAHIFAK AAMKAVKYRM HSQTR
101: GQQIDAPSPP AGSCEPPRPS TSVDKIILEA ITSLKRPFGP DGKSILMYIE ENFKMQPDMK RLVTSRLKYL TNVGTLVKKK HKYRISQNYM AEGEGQRSPQ
201: LLLEGNKENT PKPEENGVKN LTKSQVGGEV MIMGMTEKEA AAAAARAVAE AEFAMAEAEE AAREADKAEA EAEAAHIFAK AAMKAVKYRM HSQTR
Arabidopsis Description
TRB3Telomere repeat-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2X3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.