Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43862 | Canola | nucleus | 64.51 | 72.07 |
| CDY32992 | Canola | nucleus | 64.06 | 66.13 |
| CDY32708 | Canola | nucleus | 10.94 | 65.33 |
| AT1G15720.1 | Thale cress | nucleus | 56.03 | 64.36 |
| Bra002659.1-P | Field mustard | nucleus | 61.38 | 63.51 |
| Solyc06g082510.2.1 | Tomato | nucleus | 24.33 | 23.34 |
| KRH41741 | Soybean | nucleus | 6.47 | 22.31 |
| PGSC0003DMT400078128 | Potato | nucleus | 22.77 | 21.98 |
| KRH63009 | Soybean | nucleus | 21.43 | 21.92 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 20.54 | 21.9 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 23.21 | 21.71 |
| Zm00001d036356_P005 | Maize | nucleus | 20.76 | 21.38 |
| KRH54884 | Soybean | nucleus | 23.44 | 21.3 |
| KRH30478 | Soybean | nucleus | 22.1 | 21.11 |
| KRG98140 | Soybean | nucleus | 21.43 | 20.51 |
| Zm00001d007141_P003 | Maize | nucleus | 20.09 | 20.5 |
| OQU93426 | Sorghum | cytosol | 16.29 | 20.45 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 18.97 | 20.43 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 18.75 | 20.14 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 18.53 | 19.9 |
| TraesCS2B01G094500.1 | Wheat | plastid | 16.74 | 19.84 |
| EER93019 | Sorghum | nucleus | 18.75 | 19.58 |
| Os07t0695900-01 | Rice | nucleus | 16.74 | 19.53 |
| Zm00001d045123_P001 | Maize | nucleus | 17.41 | 19.35 |
| TraesCS2D01G077000.1 | Wheat | nucleus | 15.62 | 19.23 |
| TraesCS2A01G079700.1 | Wheat | plastid | 15.62 | 18.57 |
| HORVU2Hr1G013090.1 | Barley | nucleus | 15.62 | 18.47 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 10.94 | 15.81 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 9.38 | 15.05 |
| Os06t0181300-01 | Rice | nucleus | 10.71 | 14.33 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 20.76 | 13.88 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 20.09 | 13.43 |
| OQU91491 | Sorghum | nucleus | 14.73 | 11.22 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 14.73 | 11.04 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | EntrezGene:835946 | ProteinID:AED97039.1 | ProteinID:AED97040.1 | ArrayExpress:AT5G58340 |
| EnsemblPlantsGene:AT5G58340 | RefSeq:AT5G58340 | TAIR:AT5G58340 | RefSeq:AT5G58340-TAIR-G | EnsemblPlants:AT5G58340.1 | TAIR:AT5G58340.1 |
| EMBL:AY735739 | EMBL:AY924870 | Unigene:At.51101 | GO:GO:0000783 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003691 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0031627 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_001190566.1 |
| RefSeq:NP_200642.2 | PFAM:PF00249 | PO:PO:0000293 | PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF39 |
| UniProt:Q5XUY3 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00004431F9 | SEG:seg |
Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
Coordinates
chr5:+:23582495..23584470
Molecular Weight (calculated)
50427.1 Da
IEP (calculated)
4.844
GRAVY (calculated)
-0.681
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.