CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	EES13315	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	72.73	74.29
OQU93426	Sorghum	cytosol	61.77	74.23
Zm00001d007141_P003	Maize	nucleus	70.86	69.25
Zm00001d036356_P005	Maize	nucleus	69.0	68.05
Os06t0181300-01	Rice	nucleus	51.52	65.97
TraesCS7B01G047400.1	Wheat	nucleus	61.77	63.55
TraesCS7D01G146500.1	Wheat	nucleus	61.54	63.46
TraesCS7A01G145200.1	Wheat	nucleus	61.31	63.07
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	73.66	47.16
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	73.19	46.87
KRH41741	Soybean	nucleus	10.26	33.85
VIT_06s0004g08050.t01	Wine grape	nucleus	29.37	26.3
GSMUA_Achr4P27790_001	Banana	nucleus	16.78	25.81
KRH30478	Soybean	nucleus	27.27	24.95
KRG98140	Soybean	nucleus	26.57	24.36
GSMUA_Achr9P30360_001	Banana	nucleus	17.48	24.19
CDY41924	Canola	nucleus	20.98	23.32
Bra020373.1-P	Field mustard	nucleus	14.92	22.94
KRH63009	Soybean	nucleus	23.31	22.83
Solyc06g082510.2.1	Tomato	nucleus	24.71	22.7
PGSC0003DMT400078128	Potato	nucleus	23.78	21.98
CDY43862	Canola	nucleus	20.51	21.95
AT1G15720.1	Thale cress	nucleus	19.35	21.28
KRH54884	Soybean	nucleus	24.24	21.1
CDY27805	Canola	nucleus	19.35	21.07
Bra039470.1-P	Field mustard	nucleus	19.35	21.07
CDY32992	Canola	nucleus	20.75	20.51
CDY32708	Canola	nucleus	3.5	20.0
OQU91491	Sorghum	nucleus	27.27	19.9
AT5G58340.1	Thale cress	nucleus	19.58	18.75
CDY32710	Canola	cytosol	2.8	18.75
Bra002659.1-P	Field mustard	nucleus	18.88	18.71

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	UniProt:C5WMS3	EnsemblPlants:EER93019	ProteinID:EER93019	ProteinID:EER93019.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF39	InterPro:SANT/Myb
SMART:SM00717	EnsemblPlantsGene:SORBI_3001G541000	SUPFAM:SSF46689	unigene:Sbi.21461	UniParc:UPI0003C6F43A	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:80375517..80379701

Molecular Weight (calculated)

45890.5 Da

IEP (calculated)

7.137

GRAVY (calculated)

-0.366

Length

429 amino acids

Sequence
(BLAST)

001: MPPVTPGQAT LILDHVLGDP SLPAAVAKAL LAALPHPSDP TPRLCRAVVL RALAADPVSE TSLQNLHFLA SLTASPSAAA SRIATAHIAV AAFLAASAPD
101: FDAAAMKLFE RPSGRVRRAV DEGGPLASDV AMATVDQFEA AVGNSSSQTI LRGLWGNRAA AEDRVRDLVA AEWAAIGPSK LVTAAERIVG DGALETWRAA
201: DEVTRAKLRI LAGEEKTREI LAKLEETTSS ANPISTPAFE KMIDALKTSC ADLHSVVEDP LPAAKAVADE VLAARMDKGV SLNAEELGGQ PTACGAAGPS
301: TLNDKDHGPS RGKRQNLMDR NPTARTSQWD DSPDLEGSES SSPRLQLPSP RRIPPSPLPP PENKSNRRRA RKWSMFEEET LRKGVEQYGM GNWKGILDNN
401: PDVFMGRTPV DLKDKWRNMK RLGYQQPRA

Best Arabidopsis Sequence Match ( AT5G58340.1 )
(BLAST)

001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.