Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002722 | |
| PGSC0003DMT400037303 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | PGSC0003DMT400002722 | AT5G54810.1 | 21798944 |
| AT1G15720.1 | PGSC0003DMT400037303 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g082510.2.1 | Tomato | nucleus | 81.9 | 81.37 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 40.73 | 39.46 |
| KRH41741 | Soybean | nucleus | 10.99 | 39.23 |
| KRH63009 | Soybean | nucleus | 29.96 | 31.74 |
| KRG98140 | Soybean | nucleus | 30.39 | 30.13 |
| KRH30478 | Soybean | nucleus | 30.39 | 30.06 |
| KRH54884 | Soybean | nucleus | 31.03 | 29.21 |
| CDY41924 | Canola | nucleus | 23.71 | 28.5 |
| Bra039470.1-P | Field mustard | nucleus | 23.28 | 27.41 |
| CDY27805 | Canola | nucleus | 22.84 | 26.9 |
| CDY43862 | Canola | nucleus | 21.77 | 25.19 |
| OQU93426 | Sorghum | cytosol | 19.18 | 24.93 |
| AT1G15720.1 | Thale cress | nucleus | 20.69 | 24.62 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 21.77 | 24.22 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 21.77 | 24.05 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 21.55 | 23.98 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 21.34 | 23.8 |
| EER93019 | Sorghum | nucleus | 21.98 | 23.78 |
| CDY32992 | Canola | nucleus | 21.98 | 23.5 |
| CDY32710 | Canola | cytosol | 3.23 | 23.44 |
| Zm00001d007141_P003 | Maize | nucleus | 21.77 | 23.01 |
| AT5G58340.1 | Thale cress | nucleus | 21.98 | 22.77 |
| Zm00001d036356_P005 | Maize | nucleus | 21.34 | 22.76 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 13.36 | 22.22 |
| Zm00001d045123_P001 | Maize | nucleus | 19.18 | 22.08 |
| Bra002659.1-P | Field mustard | nucleus | 20.47 | 21.94 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 14.66 | 21.94 |
| Bra020373.1-P | Field mustard | nucleus | 12.72 | 21.15 |
| Os06t0181300-01 | Rice | nucleus | 13.36 | 18.51 |
| TraesCS2B01G094500.1 | Wheat | plastid | 14.87 | 18.25 |
| CDY32708 | Canola | nucleus | 2.8 | 17.33 |
| TraesCS2A01G079700.1 | Wheat | plastid | 14.01 | 17.24 |
| TraesCS2D01G077000.1 | Wheat | nucleus | 13.36 | 17.03 |
| Os07t0695900-01 | Rice | nucleus | 14.01 | 16.93 |
| HORVU2Hr1G013090.1 | Barley | nucleus | 13.58 | 16.62 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 21.77 | 15.07 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 21.55 | 14.93 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 13.36 | 10.37 |
| OQU91491 | Sorghum | nucleus | 11.64 | 9.18 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078128 | EnsemblPlantsGene:PGSC0003DMG400030385 | Gene3D:1.10.246.220 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF39 | PFAM:PF00249 | PFscan:PS51294 | PGSC:PGSC0003DMG400030385 | SEG:seg | SUPFAM:SSF46689 |
| UniParc:UPI000296100C | UniProt:M1CZF9 | MapMan:15.5.2.2 | : | : | : |
Description
Telomeric repeat binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030385]
Coordinates
chr6:+:57614588..57617481
Molecular Weight (calculated)
52053.1 Da
IEP (calculated)
6.721
GRAVY (calculated)
-0.522
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIDTDISHW ILEFILRQPL DDGILNDLIH VLPLSNDKPN LKKALLIRKI ESEISNGSVN EKILEFLELI EELNHQDGIE ASEVMKAAYC AVAVECTVKF
101: LNSEGTGGNK GKYFDAVRRI WKRRINLMEK MENVGFVSEE LWSWRDEIEA ALWDDKCSYS VIRKSKGIVA VELVKFFVRE AKERMGSPFL DVVAETYQSD
201: ETMKALFGEV NKEGACCGND REVSKGSALR RKKHVAFKRT RGGIRISDSI ESELEASGGG GQDGLPPSAE IQKAEKALKL SSLELRAMVK DPLPDALRLA
301: ETLSLARDNM GHQPAENSSD IAPPPMASSS RMVQASGEKC EAQHNCHDNA ASKPDRVNQN SAANPLELDD FFDEVTERSP SKANRVTLPT PKTTKVSPLK
401: KYEFKKITTR RKPMKWSSLE EDTLRTGVQK YGTGNWKVIL DTYHGIFSVR TACDLKDKWR NMIS
101: LNSEGTGGNK GKYFDAVRRI WKRRINLMEK MENVGFVSEE LWSWRDEIEA ALWDDKCSYS VIRKSKGIVA VELVKFFVRE AKERMGSPFL DVVAETYQSD
201: ETMKALFGEV NKEGACCGND REVSKGSALR RKKHVAFKRT RGGIRISDSI ESELEASGGG GQDGLPPSAE IQKAEKALKL SSLELRAMVK DPLPDALRLA
301: ETLSLARDNM GHQPAENSSD IAPPPMASSS RMVQASGEKC EAQHNCHDNA ASKPDRVNQN SAANPLELDD FFDEVTERSP SKANRVTLPT PKTTKVSPLK
401: KYEFKKITTR RKPMKWSSLE EDTLRTGVQK YGTGNWKVIL DTYHGIFSVR TACDLKDKWR NMIS
001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
Arabidopsis Description
TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.