Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d024702_P001 | |
| Zm00001d049610_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | Zm00001d024702_P001 | AT5G54810.1 | 21798944 |
| AT1G15720.1 | Zm00001d049610_P001 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 76.18 | 73.1 |
| Os06t0181300-01 | Rice | nucleus | 54.59 | 65.67 |
| Zm00001d007141_P003 | Maize | nucleus | 70.97 | 65.15 |
| Zm00001d036356_P005 | Maize | nucleus | 69.73 | 64.6 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 61.79 | 59.71 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 61.54 | 59.47 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 61.29 | 59.38 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 75.19 | 45.22 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 74.94 | 45.07 |
| KRH41741 | Soybean | nucleus | 8.93 | 27.69 |
| KRH30478 | Soybean | nucleus | 26.8 | 23.03 |
| KRH63009 | Soybean | nucleus | 24.57 | 22.6 |
| KRG98140 | Soybean | nucleus | 26.05 | 22.44 |
| CDY32710 | Canola | cytosol | 3.47 | 21.88 |
| CDY41924 | Canola | nucleus | 20.84 | 21.76 |
| Bra020373.1-P | Field mustard | nucleus | 14.64 | 21.15 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 25.06 | 21.09 |
| Solyc06g082510.2.1 | Tomato | nucleus | 24.07 | 20.77 |
| KRH54884 | Soybean | nucleus | 24.81 | 20.28 |
| CDY32708 | Canola | nucleus | 3.72 | 20.0 |
| AT1G15720.1 | Thale cress | nucleus | 19.11 | 19.74 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 13.65 | 19.71 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 15.14 | 19.68 |
| CDY43862 | Canola | nucleus | 19.11 | 19.2 |
| PGSC0003DMT400078128 | Potato | nucleus | 22.08 | 19.18 |
| Bra039470.1-P | Field mustard | nucleus | 18.36 | 18.78 |
| CDY27805 | Canola | nucleus | 18.36 | 18.78 |
| Bra002659.1-P | Field mustard | nucleus | 20.1 | 18.71 |
| CDY32992 | Canola | nucleus | 19.85 | 18.43 |
| AT5G58340.1 | Thale cress | nucleus | 19.35 | 17.41 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 20.6 | 13.88 |
Protein Annotations
| EnsemblPlants:Zm00001d045123_P001 | EnsemblPlants:Zm00001d045123_T001 | EnsemblPlantsGene:Zm00001d045123 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF32 | PFscan:PS51294 | ProteinID:AQL01605.1 | SEG:seg | SUPFAM:SSF46689 | UniParc:UPI000845398F |
| UniProt:A0A1D6NTU0 | MapMan:15.5.2.2 | : | : | : | : |
Description
TRF-like 5
Coordinates
chr9:-:13588271..13591170
Molecular Weight (calculated)
43097.3 Da
IEP (calculated)
7.107
GRAVY (calculated)
-0.175
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRLTPVDAT LILDHVLGDP SVPTAAAHKF LDALPFPSDA TPRLRRAILL RRLAADPVSA SSLDTLQLLA SLPASTSPIA AAHVAVAAFL ASSAPDFDAA
101: ARALFARPSG RARRAVHEGG PPALASDDAI ATVDQFEAAV GNSFSRSILS SLWGNRAAAE ERVRELLADE WTAIGPSLLE AAAVRIVGDG ALETWGAADQ
201: ATRAKLRILA GEEKTHEILG KLEEPTSSAN LISTPAVEKV FFELKTSCTD LHSVVGDLLP AAKAVVDDIL AARMEKGVSL KAEEVRGQRT TCGTAGPCAL
301: NDKDRGSSIG KPRSLMNWNP TAQTFQWEES GPECSESSLR RPPLPIVPVS PLAPRVKKNG RRKARRWCLL EEETLRKGVE QYGRGNWKEI LDNNPDVFIG
401: RTP
101: ARALFARPSG RARRAVHEGG PPALASDDAI ATVDQFEAAV GNSFSRSILS SLWGNRAAAE ERVRELLADE WTAIGPSLLE AAAVRIVGDG ALETWGAADQ
201: ATRAKLRILA GEEKTHEILG KLEEPTSSAN LISTPAVEKV FFELKTSCTD LHSVVGDLLP AAKAVVDDIL AARMEKGVSL KAEEVRGQRT TCGTAGPCAL
301: NDKDRGSSIG KPRSLMNWNP TAQTFQWEES GPECSESSLR RPPLPIVPVS PLAPRVKKNG RRKARRWCLL EEETLRKGVE QYGRGNWKEI LDNNPDVFIG
401: RTP
001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.