Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d024702_P001 | |
| Zm00001d049610_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | Zm00001d024702_P001 | AT5G54810.1 | 21798944 |
| AT1G15720.1 | Zm00001d049610_P001 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007141_P003 | Maize | nucleus | 88.51 | 87.7 |
| Zm00001d045123_P001 | Maize | nucleus | 64.6 | 69.73 |
| EER93019 | Sorghum | nucleus | 68.05 | 69.0 |
| OQU93426 | Sorghum | cytosol | 55.17 | 67.23 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 58.62 | 61.15 |
| Os06t0181300-01 | Rice | nucleus | 46.9 | 60.9 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 57.7 | 60.19 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 57.24 | 59.86 |
| KRH41741 | Soybean | nucleus | 10.11 | 33.85 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 26.9 | 24.43 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 14.94 | 23.3 |
| KRH63009 | Soybean | nucleus | 23.45 | 23.29 |
| KRH30478 | Soybean | nucleus | 24.83 | 23.03 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 16.32 | 22.9 |
| CDY41924 | Canola | nucleus | 20.23 | 22.8 |
| Solyc06g082510.2.1 | Tomato | nucleus | 24.37 | 22.7 |
| KRG98140 | Soybean | nucleus | 24.14 | 22.44 |
| Bra020373.1-P | Field mustard | nucleus | 14.02 | 21.86 |
| KRH54884 | Soybean | nucleus | 24.6 | 21.7 |
| CDY43862 | Canola | nucleus | 19.77 | 21.45 |
| PGSC0003DMT400078128 | Potato | nucleus | 22.76 | 21.34 |
| AT1G15720.1 | Thale cress | nucleus | 19.08 | 21.28 |
| CDY27805 | Canola | nucleus | 18.85 | 20.81 |
| Bra039470.1-P | Field mustard | nucleus | 18.85 | 20.81 |
| AT5G58340.1 | Thale cress | nucleus | 21.38 | 20.76 |
| CDY32992 | Canola | nucleus | 20.46 | 20.51 |
| Bra002659.1-P | Field mustard | nucleus | 19.08 | 19.17 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 22.07 | 16.05 |
| CDY32708 | Canola | nucleus | 2.76 | 16.0 |
| CDY32710 | Canola | cytosol | 1.84 | 12.5 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | EntrezGene:542591 | UniProt:A0A1D6LMN9 | ProteinID:AQK80836.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF39 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000843DB25 | EnsemblPlantsGene:Zm00001d036356 | EnsemblPlants:Zm00001d036356_P005 | EnsemblPlants:Zm00001d036356_T005 | SEG:seg |
Description
MYB-related-transcription factor 98 terminal acidic SANT 1
Coordinates
chr6:+:85555461..85558301
Molecular Weight (calculated)
46657.5 Da
IEP (calculated)
6.259
GRAVY (calculated)
-0.261
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRLTPAHAT LILDHVLGDP SIPTAVTIAL IAGIPSPSDP TPRLRRGVLL RRLATDPVSE SSLETLHLLA SLPACASPIA AAHIAVAAFL AASAPDFDAV
101: ARALFARPDG RARQAVHGGS SPALASDDAI ATVDQFEAAV GMSSSQTILR VLWGNRAAVE ERVQELLAAE WAAIGPSRLE ALAMRIVGDG AVDTWGAADE
201: AMRANLRILG EDPFFGWILQ QRSGEAKTRE ILDKLEKTTC NTNPISTPAV EKVMDALKAS CADLHSIVED PLPAAKAVAD ELLTARMEKL VSLNAQEVGG
301: QPTTCGVAGP SIHNDKDNGP GIGKPHSLME RNATARTSQW EESLGLDGSE PPSPPRPHLP SPRRLPPSPL SPPGNKNNNR RKARRWSLFE EETLRKGVEE
401: YGVGNWRDIL DNNAEAFTGR TPVDLKDKWR NMLFR
101: ARALFARPDG RARQAVHGGS SPALASDDAI ATVDQFEAAV GMSSSQTILR VLWGNRAAVE ERVQELLAAE WAAIGPSRLE ALAMRIVGDG AVDTWGAADE
201: AMRANLRILG EDPFFGWILQ QRSGEAKTRE ILDKLEKTTC NTNPISTPAV EKVMDALKAS CADLHSIVED PLPAAKAVAD ELLTARMEKL VSLNAQEVGG
301: QPTTCGVAGP SIHNDKDNGP GIGKPHSLME RNATARTSQW EESLGLDGSE PPSPPRPHLP SPRRLPPSPL SPPGNKNNNR RKARRWSLFE EETLRKGVEE
401: YGVGNWRDIL DNNAEAFTGR TPVDLKDKWR NMLFR
001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.