Factsheet for VIT_06s0004g08050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0177g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	VIT_19s0177g00310.t01	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41741	Soybean	nucleus	12.53	46.15
PGSC0003DMT400078128	Potato	nucleus	39.46	40.73
Solyc06g082510.2.1	Tomato	nucleus	38.41	39.4
KRH30478	Soybean	nucleus	36.53	37.31
KRG98140	Soybean	nucleus	36.33	37.18
KRH63009	Soybean	nucleus	33.82	36.99
KRH54884	Soybean	nucleus	35.07	34.08
CDY41924	Canola	nucleus	24.22	30.05
TraesCS7B01G047400.1	Wheat	nucleus	26.1	29.98
TraesCS7D01G146500.1	Wheat	nucleus	25.89	29.81
Bra039470.1-P	Field mustard	nucleus	24.22	29.44
CDY27805	Canola	nucleus	24.22	29.44
EER93019	Sorghum	nucleus	26.3	29.37
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	25.47	29.05
GSMUA_Achr9P30360_001	Banana	nucleus	18.79	29.03
TraesCS7A01G145200.1	Wheat	nucleus	25.26	29.02
OQU93426	Sorghum	cytosol	20.88	28.01
AT1G15720.1	Thale cress	nucleus	22.76	27.95
Zm00001d007141_P003	Maize	nucleus	25.26	27.56
CDY43862	Canola	nucleus	22.96	27.43
Zm00001d036356_P005	Maize	nucleus	24.43	26.9
CDY32992	Canola	nucleus	23.17	25.58
Zm00001d045123_P001	Maize	nucleus	21.09	25.06
GSMUA_Achr4P27790_001	Banana	nucleus	14.4	24.73
Bra002659.1-P	Field mustard	nucleus	21.92	24.25
Bra020373.1-P	Field mustard	nucleus	13.78	23.66
CDY32710	Canola	cytosol	3.13	23.44
AT5G58340.1	Thale cress	nucleus	21.71	23.21
Os06t0181300-01	Rice	nucleus	15.66	22.39
TraesCS2B01G094500.1	Wheat	plastid	17.12	21.69
HORVU2Hr1G013090.1	Barley	nucleus	17.12	21.64
Os07t0695900-01	Rice	nucleus	17.33	21.61
TraesCS2A01G079700.1	Wheat	plastid	16.91	21.49
TraesCS2D01G077000.1	Wheat	nucleus	16.08	21.15
CDY32708	Canola	nucleus	3.13	20.0
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	25.26	18.06
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	25.26	18.06
OQU91491	Sorghum	nucleus	15.87	12.93
Zm00001d013827_P001	Maize	extracellular, nucleus	15.03	12.04

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100244907	wikigene:100244907	MapMan:15.5.2.2	EMBL:AM441534	ProteinID:CAN65086
ProteinID:CAN65086.1	ProteinID:CBI15817	ProteinID:CBI15817.3	UniProt:D7SJJ1	EMBL:FN594951	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	EntrezGene:LOC100244907
wikigene:LOC100244907	PFAM:PF00249	PANTHER:PTHR21717	PANTHER:PTHR21717:SF39	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0001BE1084	ArrayExpress:VIT_06s0004g08050	EnsemblPlantsGene:VIT_06s0004g08050	EnsemblPlants:VIT_06s0004g08050.t01	unigene:Vvi.13588
RefSeq:XP_002276395	RefSeq:XP_002276395.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:8827941..8832736

Molecular Weight (calculated)

53009.7 Da

IEP (calculated)

8.246

GRAVY (calculated)

-0.407

Length

479 amino acids

Sequence
(BLAST)

001: MDEDVSRWIL EFMIRKPIGD SLVRRLISIL PLSNSHPRMK KTVLLRKIES EISDGSVSET ILELLEIIEE LDYKEGVAVL DSMKNAYCAV AVECTVKFLV
101: GSGGKEGKYF DAVKRIWRGK IHKMESSATA GLVSDQLRKW RDDIEAAVWD ARVCEDILAK NTRNDALRLV RAYVAEAWAI MGPPFLELAA RAIKLVEGLP
201: GAGNGSTCNQ AAACSPNVAT DLVVPDKDKE TLKASMLPKR KHVGGHGRRS RGGVKITDTE EVRGQTSGSK YDCLPSPEVD RVQAALKSSS LELQALVKDP
301: LPEALQLAEA VISGLAKKDV NHEPLTKDQG IIDVAAPNPS VGKNLVADQT NEADSGHQCT TDQNNVPRPS LMARNGTART CEWDDSIDAS PEGLSSDTNI
401: CLPSPKRKAV SPLKKYEITK LAKRRQMKKW SILEEDTLRT GVLKFGKGNW TLILNCYRDI FEERTQVDLK DKWRNMTKY

Best Arabidopsis Sequence Match ( AT5G58340.1 )
(BLAST)

001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.