Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G308600.1 | |
| TraesCS7B01G208700.1 | |
| TraesCS7D01G305300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | TraesCS7A01G308600.1 | AT5G54810.1 | 21798944 |
| AT1G15720.1 | TraesCS7B01G208700.1 | AT5G54810.1 | 21798944 |
| AT1G15720.1 | TraesCS7D01G305300.1 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G094500.1 | Wheat | plastid | 91.78 | 91.53 |
| TraesCS2D01G077000.1 | Wheat | nucleus | 87.0 | 90.11 |
| HORVU2Hr1G013090.1 | Barley | nucleus | 84.08 | 83.64 |
| Os07t0695900-01 | Rice | nucleus | 51.46 | 50.52 |
| CDY32708 | Canola | nucleus | 6.1 | 30.67 |
| KRH41741 | Soybean | nucleus | 9.02 | 26.15 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 27.85 | 25.18 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 37.67 | 23.75 |
| OQU91491 | Sorghum | nucleus | 36.87 | 23.64 |
| CDY32710 | Canola | cytosol | 3.98 | 23.44 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 16.45 | 20.0 |
| CDY41924 | Canola | nucleus | 20.42 | 19.95 |
| CDY43862 | Canola | nucleus | 20.42 | 19.2 |
| KRH63009 | Soybean | nucleus | 22.28 | 19.18 |
| Bra020373.1-P | Field mustard | nucleus | 14.06 | 19.0 |
| Bra039470.1-P | Field mustard | nucleus | 19.63 | 18.78 |
| CDY27805 | Canola | nucleus | 19.36 | 18.53 |
| AT1G15720.1 | Thale cress | nucleus | 19.1 | 18.46 |
| CDY32992 | Canola | nucleus | 21.22 | 18.43 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 13.53 | 18.28 |
| KRH54884 | Soybean | nucleus | 23.61 | 18.05 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 21.49 | 16.91 |
| KRG98140 | Soybean | nucleus | 20.95 | 16.88 |
| Bra002659.1-P | Field mustard | nucleus | 19.36 | 16.86 |
| KRH30478 | Soybean | nucleus | 20.69 | 16.63 |
| AT5G58340.1 | Thale cress | nucleus | 18.57 | 15.62 |
| Solyc06g082510.2.1 | Tomato | nucleus | 18.04 | 14.56 |
| PGSC0003DMT400078128 | Potato | nucleus | 17.24 | 14.01 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G079700.1 | EnsemblPlantsGene:TraesCS2A01G079700 | Gene3D:1.10.246.220 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF32 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd11660 | MapMan:15.5.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:36056044..36058191
Molecular Weight (calculated)
41145.4 Da
IEP (calculated)
7.785
GRAVY (calculated)
-0.702
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MVARATQQAS TTMPPLAAAD AFRVLEFVAG NRRVPHSLLA GLLAALPPVS PHTSPRLRKA IALRALDAAL SGSDADGSGE VLRKARDVLA DPGVAACFPD
101: HLAVVRDDVA ALRRLVDAEW ESLPPSELEL EADRIAGAGA LDTWANADQD TRKKLRRLVG ESTAREILGK LGQDPSKAPQ VDEAANAPST SGVNEGDRAQ
201: QDDEAHLGMG KGEASLAQED CARHQQEPVE RTTDARIPEK LVTSAATKGK EQATSSHVTG QAAPDHNKSH PVTGPKPSLM ERKPSAIVYQ WDSGDSDSER
301: PPHQRRLPNY ERRMRPPPAV PYKTRKKWTE IQERTLIEGV DKYGKGNWKD IKIAYPDVFQ DRSTVDMKDK FRNMGRH
101: HLAVVRDDVA ALRRLVDAEW ESLPPSELEL EADRIAGAGA LDTWANADQD TRKKLRRLVG ESTAREILGK LGQDPSKAPQ VDEAANAPST SGVNEGDRAQ
201: QDDEAHLGMG KGEASLAQED CARHQQEPVE RTTDARIPEK LVTSAATKGK EQATSSHVTG QAAPDHNKSH PVTGPKPSLM ERKPSAIVYQ WDSGDSDSER
301: PPHQRRLPNY ERRMRPPPAV PYKTRKKWTE IQERTLIEGV DKYGKGNWKD IKIAYPDVFQ DRSTVDMKDK FRNMGRH
001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
Arabidopsis Description
TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.