Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029720.1-P | Field mustard | nucleus | 98.09 | 97.78 |
| CDY27973 | Canola | nucleus | 93.95 | 93.65 |
| AT3G08780.1 | Thale cress | cytosol | 79.3 | 79.55 |
| VIT_08s0058g00530.t01 | Wine grape | cytosol | 50.32 | 51.63 |
| KRH76029 | Soybean | nucleus, plastid | 48.73 | 49.84 |
| KRH65583 | Soybean | plastid | 31.85 | 48.78 |
| Solyc09g015180.2.1 | Tomato | cytosol | 43.95 | 44.09 |
| PGSC0003DMT400044093 | Potato | cytosol | 43.63 | 43.77 |
| TraesCS5D01G156000.1 | Wheat | cytosol | 34.08 | 37.68 |
| TraesCS5A01G151000.1 | Wheat | cytosol, nucleus, plasma membrane | 33.76 | 37.32 |
| TraesCS5B01G149500.1 | Wheat | cytosol | 33.76 | 37.32 |
| Zm00001d025308_P001 | Maize | plastid | 18.15 | 36.77 |
| Os07t0540200-01 | Rice | cytosol, nucleus, plasma membrane | 33.44 | 35.96 |
| EES07862 | Sorghum | plastid | 31.21 | 34.51 |
| Os04t0479300-01 | Rice | extracellular, nucleus | 29.94 | 34.43 |
| TraesCS2A01G325500.1 | Wheat | plastid | 28.98 | 33.33 |
| KXG22792 | Sorghum | endoplasmic reticulum, peroxisome, plastid | 29.3 | 33.21 |
| Zm00001d044621_P001 | Maize | extracellular | 30.25 | 33.1 |
| TraesCS2D01G337200.1 | Wheat | extracellular | 28.98 | 32.16 |
| TraesCS2B01G356400.1 | Wheat | endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 27.07 | 31.02 |
| HORVU2Hr1G082810.2 | Barley | cytosol | 28.98 | 30.43 |
| TraesCS1A01G382300.1 | Wheat | cytosol | 22.61 | 28.86 |
| TraesCS1B01G407600.1 | Wheat | endoplasmic reticulum, plasma membrane | 20.7 | 24.71 |
Protein Annotations
| EnsemblPlants:CDY36008 | EnsemblPlantsGene:GSBRNA2T00059570001 | InterPro:FAM175 | InterPro:FAM175_plant | ncoils:Coil | PANTHER:PTHR31728 |
| PANTHER:PTHR31728:SF1 | PRINTS:PR02051 | PRINTS:PR02054 | ProteinID:CDY36008 | ProteinID:CDY36008.1 | SEG:seg |
| UniParc:UPI0004EDB6F1 | UniProt:A0A078HGN6 | MapMan:35.2 | : | : | : |
Description
BnaA05g29420DBnaA05g29420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGN6]
Coordinates
chrLK032364:-:371899..373633
Molecular Weight (calculated)
34400.5 Da
IEP (calculated)
6.380
GRAVY (calculated)
-0.422
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLSLERIE IPGPTLASLI QRASSSPGDV DGLLFGQIHR IVSTTLSDDS PSEPPPSSSS SSSDQIVATV TSFISSGKTV SFYDPLGRVD SLRIDSLRVD
101: SPDRLLGWFS ARRTTANRPS MRELSVSSSL SSRFQLPIEN SDNPNSMPSS VFILLTTPST DQLIHTHEYR AYQFRPLNRR LEPRSLGIVN IGPAFRGHYG
201: SFNPKSGFPP LLCEVSSSGM MNEDRDEGSL SGKKQAVKDQ KEVDALADGF GVGSLKRLVG AEAASYTGGV EEMYERMLAK VESLASEVEK SSAKVLELDN
301: HNRKLRYRVA RIER
101: SPDRLLGWFS ARRTTANRPS MRELSVSSSL SSRFQLPIEN SDNPNSMPSS VFILLTTPST DQLIHTHEYR AYQFRPLNRR LEPRSLGIVN IGPAFRGHYG
201: SFNPKSGFPP LLCEVSSSGM MNEDRDEGSL SGKKQAVKDQ KEVDALADGF GVGSLKRLVG AEAASYTGGV EEMYERMLAK VESLASEVEK SSAKVLELDN
301: HNRKLRYRVA RIER
001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
Arabidopsis Description
AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.