Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G156000.1 | Wheat | cytosol | 96.13 | 96.13 |
| TraesCS5B01G149500.1 | Wheat | cytosol | 94.01 | 94.01 |
| KXG22792 | Sorghum | endoplasmic reticulum, peroxisome, plastid | 64.44 | 66.06 |
| EES07862 | Sorghum | plastid | 65.49 | 65.49 |
| Zm00001d025308_P001 | Maize | plastid | 35.56 | 65.16 |
| Os07t0540200-01 | Rice | cytosol, nucleus, plasma membrane | 65.85 | 64.04 |
| Zm00001d044621_P001 | Maize | extracellular | 63.03 | 62.37 |
| TraesCS2A01G325500.1 | Wheat | plastid | 58.1 | 60.44 |
| TraesCS1A01G382300.1 | Wheat | cytosol | 45.07 | 52.03 |
| CDY27973 | Canola | nucleus | 37.68 | 33.97 |
| CDY36008 | Canola | nucleus | 37.32 | 33.76 |
| Bra029720.1-P | Field mustard | nucleus | 37.32 | 33.65 |
| VIT_08s0058g00530.t01 | Wine grape | cytosol | 35.21 | 32.68 |
| AT3G08780.1 | Thale cress | cytosol | 35.92 | 32.59 |
| Solyc09g015180.2.1 | Tomato | cytosol | 34.51 | 31.31 |
| PGSC0003DMT400044093 | Potato | cytosol | 34.51 | 31.31 |
| KRH76029 | Soybean | nucleus, plastid | 33.45 | 30.94 |
| KRH65583 | Soybean | plastid | 20.07 | 27.8 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G151000.1 | EnsemblPlantsGene:TraesCS5A01G151000 | InterPro:FAM175 | ncoils:Coil | PANTHER:PTHR31728 | PANTHER:PTHR31728:SF1 |
| PRINTS:PR02051 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:328715271..328718281
Molecular Weight (calculated)
30196.4 Da
IEP (calculated)
8.070
GRAVY (calculated)
-0.088
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGEEVKLS ISGAALAALL HRCGAAVGDC DGLLFGRAHR PPPPAPTLSD YDDQTPAAPC LFISISGHSS LSNPCSLSDP LGRPNPPPPS SPSPLGFFSS
101: RRRAPLRPSM RELALACSLS KTLSPIAHPL LFILVSPSAS DDLSTHSFDY RAFLLVGSRL VPTSLTVVNV GPGFRDQYHS FAPESPFPLL QTKPPPAAPQ
201: ADDAYSIGEQ KAVDAMVDGF GLGRLQGLVC AAAGQAAGMD SMYAGMLRRM EKLAREVEKS NHRVLDQERR NLVMRCKTAG LQLQ
101: RRRAPLRPSM RELALACSLS KTLSPIAHPL LFILVSPSAS DDLSTHSFDY RAFLLVGSRL VPTSLTVVNV GPGFRDQYHS FAPESPFPLL QTKPPPAAPQ
201: ADDAYSIGEQ KAVDAMVDGF GLGRLQGLVC AAAGQAAGMD SMYAGMLRRM EKLAREVEKS NHRVLDQERR NLVMRCKTAG LQLQ
001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
Arabidopsis Description
AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.