Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025308_P001 | Maize | plastid | 51.92 | 96.13 |
| KXG22792 | Sorghum | endoplasmic reticulum, peroxisome, plastid | 83.97 | 87.0 |
| EES07862 | Sorghum | plastid | 81.18 | 82.04 |
| Os07t0540200-01 | Rice | cytosol, nucleus, plasma membrane | 66.55 | 65.41 |
| TraesCS5B01G149500.1 | Wheat | cytosol | 63.41 | 64.08 |
| TraesCS5A01G151000.1 | Wheat | cytosol, nucleus, plasma membrane | 62.37 | 63.03 |
| TraesCS5D01G156000.1 | Wheat | cytosol | 62.02 | 62.68 |
| KRH76029 | Soybean | nucleus, plastid | 33.8 | 31.6 |
| CDY27973 | Canola | nucleus | 33.8 | 30.79 |
| VIT_08s0058g00530.t01 | Wine grape | cytosol | 32.75 | 30.72 |
| CDY36008 | Canola | nucleus | 33.1 | 30.25 |
| Bra029720.1-P | Field mustard | nucleus | 33.1 | 30.16 |
| AT3G08780.1 | Thale cress | cytosol | 32.4 | 29.71 |
| PGSC0003DMT400044093 | Potato | cytosol | 31.01 | 28.43 |
| Solyc09g015180.2.1 | Tomato | cytosol | 30.66 | 28.11 |
| KRH65583 | Soybean | plastid | 17.77 | 24.88 |
Protein Annotations
| EnsemblPlants:Zm00001d044621_P001 | EnsemblPlants:Zm00001d044621_T001 | EnsemblPlantsGene:Zm00001d044621 | InterPro:FAM175 | ncoils:Coil | PANTHER:PTHR31728 |
| PANTHER:PTHR31728:SF1 | PRINTS:PR02051 | ProteinID:ONM42061.1 | SEG:seg | UniParc:UPI000845025A | UniProt:A0A1D6NQ33 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:233490453..233491514
Molecular Weight (calculated)
29768.5 Da
IEP (calculated)
6.841
GRAVY (calculated)
0.076
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGDSATTP PVAKLSISGA ALAALLHRCA AAAGDCDGLL FGRASHLPAP PAALSDYDDA AAAAAPPAPA LSISVSGHCS LSHPSSLSDS LGRFQPHSSP
101: APASAPAPIG FFSSRRRTAL RPSMREAVLA HSLSATLASA HPLLLILVSP SASPNHSTHS YDYRAFLLHG GRLVPASLAI VNVGPGFRDQ YHAFTAESPM
201: PWLPSAPAPG HAHTLVEQKA VDEMVDGFGI GRLQELLGAA AGQAAEIDDM YAGMLSKLEK LAREVEKSNL RVLEQNCALL DMDTRKL
101: APASAPAPIG FFSSRRRTAL RPSMREAVLA HSLSATLASA HPLLLILVSP SASPNHSTHS YDYRAFLLHG GRLVPASLAI VNVGPGFRDQ YHAFTAESPM
201: PWLPSAPAPG HAHTLVEQKA VDEMVDGFGI GRLQELLGAA AGQAAEIDDM YAGMLSKLEK LAREVEKSNL RVLEQNCALL DMDTRKL
001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQVQN
301: HLQNSMLLLF KN
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQVQN
301: HLQNSMLLLF KN
Arabidopsis Description
AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.