Factsheet for Bra029720.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003173.1-P
Bra003174.1-P
Bra006453.1-P
Bra007052.1-P
Bra013840.1-P
Bra018081.1-P
Bra018126.1-P
Bra019205.1-P
Bra033769.1-P
Bra037319.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08780.1	Bra018126.1-P	AT3G47620.1	21798944
AT3G08780.1	Bra018081.1-P	AT3G48150.1	21798944
AT3G08780.1	Bra033769.1-P	AT3G48150.1	21798944
AT3G08780.1	Bra003173.1-P	AT3G54170.1	21798944
AT3G08780.1	Bra003174.1-P	AT3G54170.1	21798944
AT3G08780.1	Bra007052.1-P	AT3G54170.1	21798944
AT3G08780.1	Bra037319.1-P	AT4G00150.1	21798944
AT3G08780.1	Bra006453.1-P	AT4G24840.1	21798944
AT3G08780.1	Bra013840.1-P	AT4G24840.1	21798944
AT3G08780.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36008	Canola	nucleus	97.78	98.09
AT3G08780.1	Thale cress	cytosol	79.05	79.55
VIT_08s0058g00530.t01	Wine grape	cytosol	49.84	51.31
KRH76029	Soybean	nucleus, plastid	48.57	49.84
KRH65583	Soybean	plastid	31.75	48.78
Solyc09g015180.2.1	Tomato	cytosol	44.44	44.73
PGSC0003DMT400044093	Potato	cytosol	44.13	44.41
TraesCS5D01G156000.1	Wheat	cytosol	33.97	37.68
TraesCS5B01G149500.1	Wheat	cytosol	33.65	37.32
TraesCS5A01G151000.1	Wheat	cytosol, nucleus, plasma membrane	33.65	37.32
Zm00001d025308_P001	Maize	plastid	18.1	36.77
Os07t0540200-01	Rice	cytosol, nucleus, plasma membrane	33.02	35.62
EES07862	Sorghum	plastid	31.11	34.51
Os04t0479300-01	Rice	extracellular, nucleus	29.52	34.07
KXG22792	Sorghum	endoplasmic reticulum, peroxisome, plastid	29.21	33.21
Zm00001d044621_P001	Maize	extracellular	30.16	33.1
TraesCS2A01G325500.1	Wheat	plastid	28.57	32.97
TraesCS2D01G337200.1	Wheat	extracellular	28.57	31.8
TraesCS2B01G356400.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	26.67	30.66
HORVU2Hr1G082810.2	Barley	cytosol	28.57	30.1
TraesCS1A01G382300.1	Wheat	cytosol	22.22	28.46
TraesCS1B01G407600.1	Wheat	endoplasmic reticulum, plasma membrane	20.32	24.33

Protein Annotations

EnsemblPlants:Bra029720.1	EnsemblPlants:Bra029720.1-P	EnsemblPlantsGene:Bra029720	InterPro:FAM175	InterPro:FAM175_plant	ncoils:Coil
PANTHER:PTHR31728	PANTHER:PTHR31728:SF1	PRINTS:PR02051	PRINTS:PR02054	SEG:seg	UniParc:UPI0002547CF5
UniProt:M4ELQ1	MapMan:35.2	:	:	:	:

Description

AT3G08780 (E=6e-124) | unknown protein

Coordinates

chrA05:+:22520849..22521907

Molecular Weight (calculated)

34449.5 Da

IEP (calculated)

6.380

GRAVY (calculated)

-0.429

Length

315 amino acids

Sequence
(BLAST)

001: MDDLSLERIE IPGPTLASLI QRASSSPGDA DGLLFGQIHR IVSTTLSDDS PSEPPSSSSS SSSSDQIVAT VTSFISSGKT VSFYDPLGRV DSLRIDSLRV
101: DSPDRLLGWF SARRTTANRP SMRELSVSSS LSSRFQLPIE NSDNPNSMPS SVFILLTTPS TDQLIHTHEY RAYQFRPLNR RLEPRSLGIV NIGPAFRGHY
201: GSFNPKSGFP PLLCEVSSSG MMNEDRDEGS LSGKKQAVKD QKEVDALADG FGVGSLKRLV GAEAASYTGG VEEMYERMLA KVESLASEVE KSSAKVLELD
301: NHNRKLRYRV ARIER

Best Arabidopsis Sequence Match ( AT3G08780.1 )
(BLAST)

001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR

Arabidopsis Description

AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.