Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G325500.1 | Wheat | plastid | 61.54 | 61.54 |
| TraesCS2B01G356400.1 | Wheat | endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 58.97 | 58.76 |
| TraesCS2D01G337200.1 | Wheat | extracellular | 59.71 | 57.6 |
| HORVU2Hr1G082810.2 | Barley | cytosol | 61.54 | 56.19 |
| Os07t0540200-01 | Rice | cytosol, nucleus, plasma membrane | 57.14 | 53.42 |
| TraesCS1A01G382300.1 | Wheat | cytosol | 47.99 | 53.25 |
| TraesCS1B01G407600.1 | Wheat | endoplasmic reticulum, plasma membrane | 46.52 | 48.29 |
| KRH76029 | Soybean | nucleus, plastid | 36.26 | 32.25 |
| VIT_08s0058g00530.t01 | Wine grape | cytosol | 35.53 | 31.7 |
| AT3G08780.1 | Thale cress | cytosol | 35.53 | 30.99 |
| KRH65583 | Soybean | plastid | 23.08 | 30.73 |
| PGSC0003DMT400044093 | Potato | cytosol | 35.16 | 30.67 |
| Solyc09g015180.2.1 | Tomato | cytosol | 35.16 | 30.67 |
| CDY36008 | Canola | nucleus | 34.43 | 29.94 |
| CDY27973 | Canola | nucleus | 34.43 | 29.84 |
| Bra029720.1-P | Field mustard | nucleus | 34.07 | 29.52 |
Protein Annotations
| EnsemblPlants:Os04t0479300-01 | EnsemblPlantsGene:Os04g0479300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0031593 | InterPro:FAM175 | ncoils:Coil |
| PANTHER:PTHR31728 | PANTHER:PTHR31728:SF1 | PRINTS:PR02051 | ProteinID:BAF15008.1 | ProteinID:BAS89718.1 | SEG:seg |
| SignalP:SignalP-noTM | UniParc:UPI0000DD9129 | UniProt:Q0JCC9 | MapMan:35.2 | : | : |
Description
Similar to OSIGBa0116M22.12 protein. (Os04t0479300-01)
Coordinates
chr4:-:23968221..23972158
Molecular Weight (calculated)
28746.1 Da
IEP (calculated)
6.525
GRAVY (calculated)
-0.068
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: VSGAALAALL ACCGSADGDS DGLLFGVASR AAAAPPSFYD DDDDDQARAS SGPSLSISVV GHASVAQPSS LADPLGRFTR SSYSPDPSAA IGFFSSSRRR
101: SPLRPSMREA ALARSLSKTL VLAHPLVFLL VAPSSSAAGL SVHSFDYRAF LLVDSRLVPA SLSVVNAGPG FREQYHAFAP ESPLPSLPEQ PVKQGYSIGE
201: QKALDGMVEG FGLERVGAMV TSASALTSEM EEMYSGMLRK LEGLARQVER TNERVLDQEK QNTLLRKKVA GLK
101: SPLRPSMREA ALARSLSKTL VLAHPLVFLL VAPSSSAAGL SVHSFDYRAF LLVDSRLVPA SLSVVNAGPG FREQYHAFAP ESPLPSLPEQ PVKQGYSIGE
201: QKALDGMVEG FGLERVGAMV TSASALTSEM EEMYSGMLRK LEGLARQVER TNERVLDQEK QNTLLRKKVA GLK
001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
Arabidopsis Description
AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.