Factsheet for Os06t0105350-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0809300-01
Os05t0180600-02
Os07t0264800-01
Os08t0307400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Os07t0264800-01	AT1G72030.1	21798944
AT4G00150.1	Os05t0180600-02	AT1G60490.1	21798944
AT4G00150.1	Os08t0307400-02	AT1G60490.1	21798944
AT4G00150.1	Os03t0809300-01	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G011400.1	Wheat	plastid	69.53	63.91
TraesCS4A01G482000.1	Wheat	plastid	69.33	62.43
Zm00001d045589_P001	Maize	cytosol	61.35	60.0
EER87695	Sorghum	cytosol, plastid	61.96	59.06
TraesCS7A01G014200.1	Wheat	plastid	70.14	59.04
Os10t0551200-01	Rice	cytosol	35.38	43.47
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	13.7	36.81
Os03t0103400-01	Rice	cytosol	35.58	36.71
GSMUA_Achr11P...	Banana	cytosol	39.26	32.27
VIT_02s0154g00400.t01	Wine grape	cytosol	33.54	32.03
Solyc08g078800.1.1	Tomato	plastid	30.47	31.43
Os04t0555000-01	Rice	cytosol	44.38	30.52
GSMUA_Achr5P20860_001	Banana	cytosol	34.36	30.32
Os02t0662700-01	Rice	cytosol	43.76	30.18
CDX95633	Canola	cytosol	33.95	29.96
Os02t0663100-01	Rice	cytosol	43.56	29.79
Bra037319.1-P	Field mustard	cytosol, plastid	33.74	29.36
CDY63061	Canola	cytosol, plastid	33.54	29.18
CDY63062	Canola	cytosol, plastid	33.54	29.18
AT4G00150.1	Thale cress	cytosol, plastid	32.92	28.85
Bra003311.1-P	Field mustard	nucleus	29.65	28.66
GSMUA_Achr8P11160_001	Banana	cytosol	38.85	28.49
CDX89065	Canola	nucleus	31.7	28.18
CDX83398	Canola	cytosol	33.95	28.14
GSMUA_Achr11P...	Banana	cytosol	39.06	27.6
CDY48367	Canola	cytosol	31.7	27.48
Bra000375.1-P	Field mustard	cytosol	33.95	27.35
CDY67934	Canola	cytosol	32.52	26.59
CDY56248	Canola	cytosol	32.52	26.46
AT3G60630.1	Thale cress	cytosol	33.13	26.0
AT2G45160.1	Thale cress	cytosol	33.95	25.94
PGSC0003DMT400012104	Potato	plastid	34.97	24.43
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	38.65	24.39
Solyc01g090950.2.1	Tomato	cytosol	36.81	23.41
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	36.61	23.31
KRH75351	Soybean	cytosol	35.38	23.25
KRG88927	Soybean	cytosol	35.17	23.09
KRH76167	Soybean	cytosol	33.95	22.52
KRH65380	Soybean	cytosol	33.54	22.4
Os11t0160550-00	Rice	cytosol	19.63	20.82
Os03t0263300-01	Rice	cytosol	20.65	17.57
Os12t0162700-00	Rice	nucleus	11.25	14.91
Os11t0160600-01	Rice	cytosol	0.41	4.0

Protein Annotations

EnsemblPlants:Os06t0105350-00	EnsemblPlantsGene:Os06g0105350	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF43	PFAM:PF03514	PFscan:PS50985	ProteinID:BAS95739.1	SEG:seg	UniParc:UPI000393A205
UniProt:A0A0P0WRA8	MapMan:15.5.12	:	:	:	:

Description

Similar to Scarecrow-like 6. (Os06t0105350-00)

Coordinates

chr6:+:365289..366758

Molecular Weight (calculated)

52017.0 Da

IEP (calculated)

5.713

GRAVY (calculated)

-0.022

Length

489 amino acids

Sequence
(BLAST)

001: MLPMINIALM SSSSCHPHNP TTLPLPEPDS SKSPEPTSVL YNRSSPSTSL GSCSSKPPED PPPPIAADDD CDWDAVVDMH MHMLAPAPAP DSSFLRWIMD
101: TGYADADTFP DHPSFDSDLL QLPMPMPSDH PPQPLVDDLL DAARLLDAGD STSAREILAR LNHRLPSLPS PPGHAHPPLL RAAALLRDAL LPPTALPVSS
201: TPLDVPLKLA AHKALADASP TVQFTTFTST QAFLDALGSA RRLHLLDFDV GFGAHWPPLM QELAHHWRRA AGPPPNLKVT ALVSPGSSHP LELHLTNESL
301: TRFAAELGIP FEFTALVFDP LSSASPPLGL SAAPDEAVAV HLTAGSGAFS PAPAHLRVVK ELRPAVVVCV DHGCERGALN LLQSCAALLE SLDAAGASPD
401: VVSKVEQFVL RPRVERLAVG GGDKLPPPLQ SMLASAGFAA LQVSNAAEAQ AECLLRRTAS HGFHVEKRQA ALALWWQRSE LVSVSAWRC

Best Arabidopsis Sequence Match ( AT2G45160.1 )
(BLAST)

001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC

Arabidopsis Description

SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.