Factsheet for Solyc01g090950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g025710.2.1
Solyc04g015350.2.1
Solyc11g020000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Solyc03g025710.2.1	AT1G72030.1	21798944
AT3G60630.1	Solyc11g020000.1.1	AT1G72030.1	21798944
AT4G00150.1	Solyc04g015350.2.1	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	97.79	97.92
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	64.11	63.61
AT4G00150.1	Thale cress	cytosol, plastid	39.4	54.3
Bra037319.1-P	Field mustard	cytosol, plastid	37.84	51.78
CDY63062	Canola	cytosol, plastid	37.84	51.78
CDY63061	Canola	cytosol, plastid	37.84	51.78
KRG88927	Soybean	cytosol	49.28	50.87
KRH75351	Soybean	cytosol	49.15	50.81
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	11.96	50.55
KRH76167	Soybean	cytosol	48.37	50.47
KRH65380	Soybean	cytosol	47.59	50.0
Zm00001d022034_P001	Maize	cytosol	19.64	49.35
Solyc08g078800.1.1	Tomato	plastid	30.04	48.73
AT3G60630.1	Thale cress	cytosol	39.27	48.48
CDX89065	Canola	nucleus	34.33	48.0
CDX95633	Canola	cytosol	34.46	47.83
CDY48367	Canola	cytosol	34.2	46.63
Bra003311.1-P	Field mustard	nucleus	30.56	46.44
GSMUA_Achr11P...	Banana	cytosol	35.5	45.88
CDX83398	Canola	cytosol	35.11	45.76
Os10t0551200-01	Rice	cytosol	23.54	45.48
GSMUA_Achr5P20860_001	Banana	cytosol	32.51	45.13
GSMUA_Achr6P36740_001	Banana	cytosol	27.96	45.07
CDY67934	Canola	cytosol	34.72	44.65
Bra000375.1-P	Field mustard	cytosol	35.24	44.65
GSMUA_Achr1P05940_001	Banana	plastid	30.56	44.51
CDY56248	Canola	cytosol	34.33	43.93
AT2G45160.1	Thale cress	cytosol	36.41	43.75
Zm00001d047957_P001	Maize	cytosol	7.15	42.64
GSMUA_Achr8P11160_001	Banana	cytosol	35.11	40.48
Zm00001d027292_P001	Maize	peroxisome	24.58	39.29
HORVU1Hr1G053510.1	Barley	plastid	31.6	39.19
TraesCS1D01G212800.1	Wheat	cytosol	31.34	38.81
TraesCS1B01G223400.1	Wheat	cytosol, plastid	31.34	38.62
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	31.34	38.56
Zm00001d035873_P001	Maize	cytosol, plastid	14.17	38.11
TraesCS7D01G011400.1	Wheat	plastid	26.27	37.97
GSMUA_Achr11P...	Banana	cytosol	34.07	37.86
Zm00001d022162_P001	Maize	cytosol	8.06	37.58
Zm00001d045589_P001	Maize	cytosol	24.32	37.4
EER87695	Sorghum	cytosol, plastid	24.84	37.23
Os03t0103400-01	Rice	cytosol	22.89	37.13
TraesCS4A01G482000.1	Wheat	plastid	26.01	36.83
Os06t0105350-00	Rice	plastid	23.41	36.81
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	30.04	36.26
EER91968	Sorghum	cytosol, mitochondrion	30.17	36.25
Os02t0662700-01	Rice	cytosol	33.42	36.25
Zm00001d029855_P001	Maize	mitochondrion	30.3	36.12
Zm00001d002718_P001	Maize	cytosol	33.81	36.06
Os04t0555000-01	Rice	cytosol	33.29	36.01
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	32.9	35.99
TraesCS6D01G229400.1	Wheat	mitochondrion	33.03	35.93
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	29.78	35.89
TraesCS4D01G360200.1	Wheat	cytosol	29.91	35.83
TraesCS6A01G247200.1	Wheat	mitochondrion	32.77	35.8
EES05768	Sorghum	cytosol	33.29	35.75
TraesCS6B01G277400.1	Wheat	mitochondrion	32.51	35.71
TraesCS4B01G367300.1	Wheat	cytosol	29.78	35.67
Zm00001d026158_P001	Maize	cytosol	33.29	35.65
EES11245	Sorghum	cytosol, nucleus, peroxisome	33.29	35.56
Os02t0663100-01	Rice	cytosol	32.77	35.24
Zm00001d051387_P001	Maize	cytosol	32.25	35.03
Zm00001d042852_P001	Maize	cytosol	11.18	34.96
TraesCS7A01G014200.1	Wheat	plastid	26.14	34.6
Zm00001d018956_P001	Maize	plastid	6.37	34.27
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	31.21	33.99
Zm00001d027569_P001	Maize	plastid	13.13	32.27
Solyc02g085600.1.1	Tomato	plastid	22.24	31.9
Zm00001d031615_P001	Maize	cytosol	10.79	30.51
OQU85680	Sorghum	mitochondrion	24.84	29.52
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	12.87	27.97
Solyc11g013150.1.1	Tomato	cytosol	15.21	24.02
Solyc11g005610.1.1	Tomato	cytosol	14.43	22.56

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0043565
GO:GO:0048768	GO:GO:0051301	InterPro:IPR005202	UniProt:K4AZ35	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF11	EnsemblPlantsGene:Solyc01g090950.2	EnsemblPlants:Solyc01g090950.2.1	InterPro:TF_GRAS	UniParc:UPI0002767E29
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:84656078..84658972

Molecular Weight (calculated)

83495.0 Da

IEP (calculated)

5.722

GRAVY (calculated)

-0.213

Length

769 amino acids

Sequence
(BLAST)

001: MKGMPLPFEF EGKGVLELDV LFNKDSILNS WSNHNTSKES SSCCYFVNSP SAVLDTIRSP RPINSSSTLS SSLGGGGGGG GTASTDTAGG GVAAVSANPS
101: SKWQQQQQDN TTATSSNVGA ESELQQVQPP SSLEMGAAAT GGDKCAMEEW EGGLSESVMA SPCQEQSILR WIMGDVDDPS MANLNKVLQV SGTGDYEFNG
201: GFGVVDQGFG VDPVGQIGSF MPAISSSVSM SSSSFPTNRM NSDKIGLVSN PPTNLPQNPI FPSLSNNLGP IAFGQTQQQP FESTDLKPHA FNSQFLINQH
301: QTQIPQNPSF LLPLPFAQQE QNLALPPQAK RHNPGTMGGL EPGSQISKGL FLDAGHQQPT PSQGLAHQLQ LLPHFRPGAM GTKPKMVGEE MAQFHQLQQQ
401: QQQQQQAIID QLFKAAELVQ TGNPVLAQGI LARLNHQLSP IGKPFYRAAF YCKEALQLLL HANTNNLNPS MASSPFSLIF KIGAYKSFSE ISPVAQFANF
501: TCNQALLEVL DGFERIHIVD FDIGYGGQWA SLMQELALRS GGAPTLKITA LASPSTHDQL ELGLTRENLI HFASEINMAF EFEILSIDSL NSTSWSLPPL
601: VSENEAIAVN LPVSSLSSYQ LSLPLVLRFV KQLSPRIVVS VDRGCDRTDL PFPNHVIQAL QSYSNLLESL DAVNVNFDAL QKIERFLLQP GIERIVMGRF
701: RSPEKTQHWR SLFLSSGFAP LSLSNFTESQ AECVVKRTPV RGFHVEKRQS SLVLCWQRKE LISASAWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.