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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • vacuole 1
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g090950.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G60490.1 Solyc01g090950.2.1 AT3G60630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_01s0127g00430.t01 Wine grape cytosol 88.71 88.71
KRH62223 Soybean cytosol 86.26 86.36
KRH52943 Soybean cytosol 84.54 84.85
Bra027152.1-P Field mustard cytosol 73.01 83.57
KXG24803 Sorghum cytosol 15.21 83.22
AT1G60490.1 Thale cress cytosol 80.98 81.08
CDY47220 Canola cytosol 80.12 80.32
CDY53049 Canola cytosol 80.12 80.32
GSMUA_Achr1P21120_001 Banana cytosol 81.6 75.23
TraesCS5D01G065700.1 Wheat cytosol, plastid 74.6 73.88
TraesCS5A01G054400.1 Wheat cytosol, plastid 73.99 73.27
Os05t0180600-02 Rice cytosol 73.01 73.1
Zm00001d050219_P004 Maize cytosol, plasma membrane 72.02 70.81
TraesCS5B01G062000.3 Wheat cytosol, plastid 73.5 70.06
HORVU5Hr1G013230.1 Barley cytosol, plastid 73.99 67.37
Os08t0307400-02 Rice cytosol 57.79 56.95
Solyc11g043120.1.1 Tomato extracellular, vacuole 15.21 23.98
Solyc11g005910.1.1 Tomato cytosol 12.64 9.08
Solyc11g043130.1.1 Tomato nucleus 6.87 3.81
Protein Annotations
Gene3D:1.10.1070.11Gene3D:1.25.40.70Gene3D:2.60.40.150MapMan:22.5.1.1MapMan:27.5.1.1Gene3D:3.30.1010.10
InterPro:ARM-type_foldInterPro:C2_domain_sfGO:GO:0000045GO:GO:0000166GO:GO:0000407GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005768GO:GO:0005777GO:GO:0006464GO:GO:0006468GO:GO:0006629
GO:GO:0006810GO:GO:0006897GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009628GO:GO:0009651
GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0016197GO:GO:0016301GO:GO:0016303
GO:GO:0016310GO:GO:0016740GO:GO:0019538GO:GO:0030242GO:GO:0034271GO:GO:0034272
GO:GO:0036092GO:GO:0046854GO:GO:0048015GO:GO:0055046GO:GO:0072593InterPro:IPR000403
InterPro:IPR001263InterPro:IPR002420InterPro:IPR035892InterPro:IPR036940UniProt:K4BQ38InterPro:Kinase-like_dom_sf
InterPro:MHC_I/II-like_Ag-recogPFAM:PF00454PFAM:PF00613PFAM:PF00792InterPro:PI3/4_kinase_CSInterPro:PI3/4_kinase_cat_dom
InterPro:PI3/4_kinase_cat_sfInterPro:PI3K_C2_domInterPro:PI3K_Vps34PIRSF:PIRSF000587InterPro:PI_KinaseInterPro:PInositide-3_kin_accessory_dom
ScanProsite:PS00915ScanProsite:PS00916PFscan:PS50290PFscan:PS51545PFscan:PS51547PANTHER:PTHR10048
PANTHER:PTHR10048:SF62SMART:SM00142SMART:SM00145SMART:SM00146SUPFAM:SSF48371SUPFAM:SSF49562
SUPFAM:SSF54452SUPFAM:SSF56112EnsemblPlantsGene:Solyc04g015350.2EnsemblPlants:Solyc04g015350.2.1UniParc:UPI00027669DCSEG:seg
Description
No Description!
Coordinates
chr4:+:5548786..5561202
Molecular Weight (calculated)
93302.7 Da
IEP (calculated)
6.986
GRAVY (calculated)
-0.297
Length
815 amino acids
Sequence
(BLAST)
001: MSGNEFRFFL SCDINLPVTY RIEKLEGKLL PPKLADSDNV DSTTEERKAE LYVESTLYVD GAPFGLPMRT RLETGAPSFC WNELITLSTK YRDLTANSQL
101: SFTVWDVSCG KGGGLIGGAT IHLFNMKKQL KTGKHKLRLW PGKEADGSIN TTTPGKVPRE ERGELERLEK LVNKYERGQI QRVDWLDRLA FKAMDKIKET
201: ENSRNGSSHL YVVVDFCSFE HRVVFQESGA NFLLPSPIAS TNELVTVYDP EVGKINPSEH KQLKLARSLN RGIIDRDLKP SITERKSIQR ILKYPPTRNL
301: SGDERQMLWK FRFSLMLEKR ALTKFLRCVE WSDVQEAKQA LELMHKWESI DLCDALELLS PVFESEEVRA YAVSVLEKAD DEELQCYLLQ LVQALRFERS
401: DKSRLSHFLV QRSLRNVELA SFLRWFVAVE LHDPAYAKRF YCTYEILEES MLKLGAGASG DEDGYKLWQS LVRQTELTAQ LCSIMRDVRN VRGGTQKKIE
501: KLRQLLSGLL SELTYFDEPI RSPLAPGMLI TGIIPSESSI FKSALHPLRL TFRTANGGCC KIIFKKGDDL RQDQLVVQMV SLMDRLLKLE NLDLHLTPYR
601: VLATGHDEGM LEFIPSKPLA QIISEHRSIV SYLQKFHPDE NGPFGITSTC LETFIKSCAG YSVITYILGI GDRHLDNLLL RDDGRLFHVD FGFILGRDPK
701: PFPPPMKLCK EMVEAMGGAE SQYYTRFKSY CCEAYNILRK SSNLILNLFH LMAGSNIPDI ASDPEKGILK LQEKFRLDLD DEECIHFFQD LINESVSALF
801: PQMVETIHRW AQYWR
Best Arabidopsis Sequence Match ( AT1G60490.1 )
(BLAST)
001: MGANEFRFFL SCDINSPVTF RIEKLDGNLP VKKSSDSGVV SIAEEKKPEL YIECALYIDG APFGLPMRTR LKTTGPPYCW NELITLSSKY RDLTAHSQLA
101: ITVWDVSCGK TEGLIGGATV LLFNSKMQMK SGKQKLRLWQ GKEADGSFPT STPGKVPRHE RGELERLEKL MNKYERGQIQ SIDWLDRLML KSLDTIKEQE
201: STKHGSSHLF VVIDFCSFEH RVVFQESGAN LFITAPIGST NEFVTVWDTE LGKTNPSENK QLKLARSLDR GIIDRDLKPS NIERKSIQRV LKYPPTRTLS
301: GDERQLLWKF RFSLMSEKRA LTKFLRCVEW SDVQEAKQAI QLMYKWEMID VCDALELLSP LFESEEVRAY AVSVLERADD EELQCYLLQL VQALRFERSD
401: RSCLSQFLVQ RALQNIELAS FLRWYVAVEL HDHVYAKRFY STYELLEENI IKLPPGVNGE DGYQLWQSLV RQTELTAQLC SITREVRNVR GNTQKKIEKL
501: RQLLGGLLSE LTYFEEPIRS PLTPNVLIKG IVAGESSLFK SALHPLRLTF RTPEEGGSCK LIFKKGDDLR QDQLVVQMVW LMDRLLKLEN LDLCLTPYKV
601: LATGHDEGML EFIPSRSLAQ ILSEHRSITS YLQKFHPDEH APFGITATCL DTFIKSCAGY SVITYILGIG DRHLDNLLLT DDGRLFHVDF AFILGRDPKP
701: FPPPMKLCKE MVEAMGGAES QYYTRFKSYC CEAYNILRKS SNLILNLFHL MAGSTIPDIA SDPEKGILKL QEKFRLDMDD EACIHFFQDL INESVSALFP
801: QMVETIHRWA QYWR
Arabidopsis Description
ATVPS34Phosphatidylinositol 3-kinase VPS34 [Source:UniProtKB/Swiss-Prot;Acc:P42339]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.