CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88927
KRH65380
KRH75351
KRH76167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60490.1	KRG88927	AT3G60630.1	21798944
AT1G60490.1	KRH65380	AT3G60630.1	21798944
AT1G60490.1	KRH75351	AT3G60630.1	21798944
AT1G60490.1	KRH76167	AT3G60630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52943	Soybean	cytosol	95.7	95.94
VIT_01s0127g00430.t01	Wine grape	cytosol	88.94	88.83
Solyc04g015350.2.1	Tomato	cytosol	86.36	86.26
Bra027152.1-P	Field mustard	cytosol	73.96	84.55
AT1G60490.1	Thale cress	cytosol	82.19	82.19
CDY47220	Canola	cytosol	81.7	81.8
CDY53049	Canola	cytosol	81.33	81.43
KXG24803	Sorghum	cytosol	14.86	81.21
GSMUA_Achr1P21120_001	Banana	cytosol	81.7	75.23
Os05t0180600-02	Rice	cytosol	73.83	73.83
TraesCS5D01G065700.1	Wheat	cytosol, plastid	74.57	73.75
TraesCS5A01G054400.1	Wheat	cytosol, plastid	74.2	73.39
TraesCS5B01G062000.3	Wheat	cytosol, plastid	74.32	70.76
Zm00001d050219_P004	Maize	cytosol, plasma membrane	71.87	70.57
HORVU5Hr1G013230.1	Barley	cytosol, plastid	74.08	67.37
Os08t0307400-02	Rice	cytosol	59.71	58.77
KRH64048	Soybean	nucleus	12.41	9.19
KRH53891	Soybean	nucleus	12.16	9.04
KRH43548	Soybean	cytosol	12.29	8.99
KRH59566	Soybean	cytosol	12.16	8.9
KRH60863	Soybean	cytosol	18.8	7.52
KRH51547	Soybean	nucleus	16.58	7.01

Protein Annotations

Gene3D:1.10.1070.11	Gene3D:1.25.40.70	Gene3D:2.60.40.150	MapMan:22.5.1.1	MapMan:27.5.1.1	Gene3D:3.30.1010.10
EMBL:ACUP02002227	InterPro:ARM-type_fold	InterPro:C2_domain_sf	EnsemblPlantsGene:GLYMA_04G094500	GO:GO:0000045	GO:GO:0000166
GO:GO:0000407	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005777	GO:GO:0006464
GO:GO:0006468	GO:GO:0006629	GO:GO:0006810	GO:GO:0006897	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016197	GO:GO:0016301	GO:GO:0016303	GO:GO:0016310	GO:GO:0016740
GO:GO:0019538	GO:GO:0030242	GO:GO:0034271	GO:GO:0034272	GO:GO:0036092	GO:GO:0046854
GO:GO:0048015	UniProt:I1JV67	InterPro:IPR000403	InterPro:IPR001263	InterPro:IPR002420	InterPro:IPR035892
InterPro:IPR036940	EnsemblPlants:KRH62223	ProteinID:KRH62223	ProteinID:KRH62223.1	InterPro:Kinase-like_dom_sf	InterPro:MHC_I/II-like_Ag-recog
PFAM:PF00454	PFAM:PF00613	PFAM:PF00792	InterPro:PI3/4_kinase_CS	InterPro:PI3/4_kinase_cat_dom	InterPro:PI3/4_kinase_cat_sf
InterPro:PI3K_C2_dom	InterPro:PI3K_Vps34	PIRSF:PIRSF000587	InterPro:PI_Kinase	InterPro:PInositide-3_kin_accessory_dom	ScanProsite:PS00915
ScanProsite:PS00916	PFscan:PS50290	PFscan:PS51545	PFscan:PS51547	PANTHER:PTHR10048	PANTHER:PTHR10048:SF62
SMART:SM00142	SMART:SM00145	SMART:SM00146	SUPFAM:SSF48371	SUPFAM:SSF49562	SUPFAM:SSF54452
SUPFAM:SSF56112	UniParc:UPI00023C0716	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:8419668..8431007

Molecular Weight (calculated)

93317.5 Da

IEP (calculated)

7.139

GRAVY (calculated)

-0.292

Length

814 amino acids

Sequence
(BLAST)

001: MTGNEFRFFL SCDISVPVTF RVERLEGNLP LPNPKSPDLE TNAPTENRTK ELFVECALYI DGAPFGLPMR TRLESSGPSY CWNELITLTT KYRDLTAQSQ
101: LTFTVWDLSH GEGLIGGATI LLFNNKKQLK TGKQKLRLWA GKEADGTFPT STPGKVPRHE RGELERLEKL VNKYERGQIQ RVDWLDRLTF KTMERIKERE
201: SLKNGSSHLY LVVDFCSFEH RVVFQESGAN FLFPSPIAST NDIVVVWDPE VGKINPSEHK QLKLARSLTR GVIDRDLKPS SNERKSIQRI LKYPPTRTLS
301: GDERQLLWKF RFSLMSEKRA LTKFLRCVEW SDVQEAKQAL ELMGKWEMID VCDALELLSP VFESEEVRAY AVSVLERADD EELQCYLLQL VQALRFERSD
401: KSRLSHFLVQ RALRNIELAS FLRWYVAVEL YDPAYAKRFY CTYEILEENM MKIAAGVNGE EDGFKQWQSL VRQTELTAQL CSITREVRNV RGNTQKKIEK
501: LRQLLSGLLS ELTYFDEPIR SPLAPGVLIA GIVPSESSIF KSALHPLRLS FRTANGGTCK IIFKKGDDLR QDQLVVQMVS LMDRLLKLEN LDLHLTPYKV
601: LATGQDEGML EFIPSRSLAQ ILSENRSIIS YLQKFHPDDH GPFGITATCL ETFIKSCAGY SVITYILGIG DRHLDNLLLR NDGGLFHVDF GFILGRDPKP
701: FPPPMKLCKE MVEAMGGAES QYYTRFKSYC CEAYNILRKS SNLILNLFYL MAGSNIPDIA SDPEKGILKL QEKFRLDLDD EASIHFFQDL INESVSALFP
801: QMVETIHRWA QYWR

Best Arabidopsis Sequence Match ( AT1G60490.1 )
(BLAST)

001: MGANEFRFFL SCDINSPVTF RIEKLDGNLP VKKSSDSGVV SIAEEKKPEL YIECALYIDG APFGLPMRTR LKTTGPPYCW NELITLSSKY RDLTAHSQLA
101: ITVWDVSCGK TEGLIGGATV LLFNSKMQMK SGKQKLRLWQ GKEADGSFPT STPGKVPRHE RGELERLEKL MNKYERGQIQ SIDWLDRLML KSLDTIKEQE
201: STKHGSSHLF VVIDFCSFEH RVVFQESGAN LFITAPIGST NEFVTVWDTE LGKTNPSENK QLKLARSLDR GIIDRDLKPS NIERKSIQRV LKYPPTRTLS
301: GDERQLLWKF RFSLMSEKRA LTKFLRCVEW SDVQEAKQAI QLMYKWEMID VCDALELLSP LFESEEVRAY AVSVLERADD EELQCYLLQL VQALRFERSD
401: RSCLSQFLVQ RALQNIELAS FLRWYVAVEL HDHVYAKRFY STYELLEENI IKLPPGVNGE DGYQLWQSLV RQTELTAQLC SITREVRNVR GNTQKKIEKL
501: RQLLGGLLSE LTYFEEPIRS PLTPNVLIKG IVAGESSLFK SALHPLRLTF RTPEEGGSCK LIFKKGDDLR QDQLVVQMVW LMDRLLKLEN LDLCLTPYKV
601: LATGHDEGML EFIPSRSLAQ ILSEHRSITS YLQKFHPDEH APFGITATCL DTFIKSCAGY SVITYILGIG DRHLDNLLLT DDGRLFHVDF AFILGRDPKP
701: FPPPMKLCKE MVEAMGGAES QYYTRFKSYC CEAYNILRKS SNLILNLFHL MAGSTIPDIA SDPEKGILKL QEKFRLDMDD EACIHFFQDL INESVSALFP
801: QMVETIHRWA QYWR

Arabidopsis Description

ATVPS34Phosphatidylinositol 3-kinase VPS34 [Source:UniProtKB/Swiss-Prot;Acc:P42339]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.