Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH65380 | Soybean | cytosol | 92.94 | 93.58 |
| KRH75351 | Soybean | cytosol | 54.55 | 54.03 |
| KRG88927 | Soybean | cytosol | 54.27 | 53.69 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 38.94 | 51.43 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 53.32 | 50.71 |
| Bra037319.1-P | Field mustard | cytosol, plastid | 38.26 | 50.18 |
| CDY63061 | Canola | cytosol, plastid | 38.26 | 50.18 |
| CDY63062 | Canola | cytosol, plastid | 38.26 | 50.18 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 50.61 | 48.57 |
| Solyc01g090950.2.1 | Tomato | cytosol | 50.47 | 48.37 |
| CDX95633 | Canola | cytosol | 34.74 | 46.21 |
| Zm00001d022034_P001 | Maize | cytosol | 19.0 | 45.75 |
| CDX89065 | Canola | nucleus | 34.06 | 45.64 |
| CDY48367 | Canola | cytosol | 34.33 | 44.86 |
| AT3G60630.1 | Thale cress | cytosol | 37.72 | 44.62 |
| Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 10.99 | 44.51 |
| Bra003311.1-P | Field mustard | nucleus | 30.53 | 44.47 |
| CDX83398 | Canola | cytosol | 35.55 | 44.41 |
| CDY67934 | Canola | cytosol | 35.96 | 44.31 |
| CDY56248 | Canola | cytosol | 35.96 | 44.09 |
| Bra000375.1-P | Field mustard | cytosol | 35.82 | 43.49 |
| AT2G45160.1 | Thale cress | cytosol | 36.77 | 42.34 |
| Os10t0551200-01 | Rice | cytosol | 22.66 | 41.96 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 30.66 | 40.79 |
| GSMUA_Achr11P... | Banana | cytosol | 32.7 | 40.5 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 26.05 | 40.25 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 28.22 | 39.39 |
| Zm00001d027292_P001 | Maize | peroxisome | 24.15 | 37.01 |
| Zm00001d045589_P001 | Maize | cytosol | 24.83 | 36.6 |
| Zm00001d047957_P001 | Maize | cytosol | 6.24 | 35.66 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 32.16 | 35.53 |
| HORVU1Hr1G053510.1 | Barley | plastid | 29.85 | 35.48 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 29.72 | 35.27 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 29.72 | 35.04 |
| TraesCS7D01G011400.1 | Wheat | plastid | 25.24 | 34.96 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 29.58 | 34.94 |
| TraesCS4A01G482000.1 | Wheat | plastid | 25.37 | 34.44 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 13.3 | 34.27 |
| GSMUA_Achr11P... | Banana | cytosol | 32.02 | 34.1 |
| Os03t0103400-01 | Rice | cytosol | 21.85 | 33.97 |
| Os06t0105350-00 | Rice | plastid | 22.52 | 33.95 |
| EER87695 | Sorghum | cytosol, plastid | 23.61 | 33.92 |
| Os02t0662700-01 | Rice | cytosol | 32.56 | 33.85 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 32.97 | 33.75 |
| Os02t0663100-01 | Rice | cytosol | 32.43 | 33.43 |
| Zm00001d002718_P001 | Maize | cytosol | 32.7 | 33.43 |
| Zm00001d026158_P001 | Maize | cytosol | 32.29 | 33.15 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 28.49 | 32.97 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 31.48 | 32.95 |
| Zm00001d051387_P001 | Maize | cytosol | 31.61 | 32.91 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 28.63 | 32.87 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 28.63 | 32.87 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 31.34 | 32.86 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 31.21 | 32.86 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 31.48 | 32.81 |
| Zm00001d022162_P001 | Maize | cytosol | 7.33 | 32.73 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 28.09 | 32.45 |
| Zm00001d029855_P001 | Maize | mitochondrion | 28.36 | 32.4 |
| Os04t0555000-01 | Rice | cytosol | 31.21 | 32.35 |
| EER91968 | Sorghum | cytosol, mitochondrion | 28.09 | 32.34 |
| EES05768 | Sorghum | cytosol | 31.34 | 32.26 |
| TraesCS7A01G014200.1 | Wheat | plastid | 25.24 | 32.01 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 29.58 | 30.88 |
| Zm00001d018956_P001 | Maize | plastid | 5.7 | 29.37 |
| KRH69945 | Soybean | plastid | 20.49 | 28.87 |
| KRH76844 | Soybean | plastid | 20.49 | 28.76 |
| KRH08304 | Soybean | plastid | 21.03 | 28.7 |
| KRH28630 | Soybean | plastid | 19.95 | 28.49 |
| Zm00001d027569_P001 | Maize | plastid | 11.8 | 27.8 |
| OQU85680 | Sorghum | mitochondrion | 23.88 | 27.2 |
| Zm00001d042852_P001 | Maize | cytosol | 8.96 | 26.83 |
| Zm00001d031615_P001 | Maize | cytosol | 8.96 | 24.26 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 11.53 | 24.01 |
| KRH18776 | Soybean | cytosol | 15.06 | 23.52 |
| KRH53205 | Soybean | cytosol | 14.79 | 22.02 |
| KRH64716 | Soybean | cytosol | 14.38 | 21.12 |
| KRH43393 | Soybean | cytosol | 13.3 | 20.12 |
Protein Annotations
| EntrezGene:100801785 | MapMan:15.5.12 | EMBL:ACUP02000578 | EnsemblPlantsGene:GLYMA_01G136300 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0030154 | GO:GO:0040007 | GO:GO:0043565 | GO:GO:0048768 | GO:GO:0051301 | UniProt:I1J7R8 |
| InterPro:IPR005202 | EnsemblPlants:KRH76167 | ProteinID:KRH76167 | ProteinID:KRH76167.1 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF11 | InterPro:TF_GRAS | UniParc:UPI0002337094 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr1:-:46034902..46038454
Molecular Weight (calculated)
81394.2 Da
IEP (calculated)
6.108
GRAVY (calculated)
-0.273
Length
737 amino acids
Sequence
(BLAST)
(BLAST)
001: MKAMPLPFEE FQGKGVLDFS SASDLFSVLL HHPQPKWTTD KADYCYVGSS TEPTSVLDSR RSPSPPTSSS TMSSSLGSSS NNSTSKGGGG SGTSANTTTN
101: PTPPSGNNNN NPPQESSPEK CGIRMEDWEG QDQSILRLIM GDVEDPSAGL SKLLQSTACG SQSVDFNAGF GVVDQQGLNM NMNMVSSGNI DQNYPAGFPF
201: IAENIDGQNA KAGSGTGQVS ESVVFSGNNP LMVSTSVSPG VFTSQQQQEF GVVDEKPQVI NPQFMLNQNQ VQFSENPSFF VPLMYPQVQV QEQQVFSPPH
301: QSKRPLFDTI GHNFQAPRLP LLDSGQEVFG RRQQTQLPLF PHHMQQQQQQ QQSMGLPSAK QQKVSSTGDD ASHQFQQAIF DQLYKTAELI EAGNPVHAQG
401: ILARLNHQLS PIGKPFQRAA FYMKEALMSL LHSNAHSFMA FSPISFIFKI GAYKSFSEIS PVLQFANFTC NQALIEAVER FDRIHVIDFD IGFGVQWSSF
501: MQELALRSSG APSLKVTAIV SPSTCDEVEL NFTRENLIQY AKDINVSFEL NVFSIESLNS ASCPLLGQFF DNEAIAVNMP VSSFTNYPSL FPSVLHFVKQ
601: LRPKVVVTLD RICDRIDVPL PTNVVHVLQC YSALLESLDA VNVNLDALQK IERHFIQPAI KKIILGHHHS QEKLPPWRNL FIQSGFSPFT FSNFTEAQAE
701: CLVQRAPVRG FHVERKPSSL VLCWQRKELI SVSTWRC
101: PTPPSGNNNN NPPQESSPEK CGIRMEDWEG QDQSILRLIM GDVEDPSAGL SKLLQSTACG SQSVDFNAGF GVVDQQGLNM NMNMVSSGNI DQNYPAGFPF
201: IAENIDGQNA KAGSGTGQVS ESVVFSGNNP LMVSTSVSPG VFTSQQQQEF GVVDEKPQVI NPQFMLNQNQ VQFSENPSFF VPLMYPQVQV QEQQVFSPPH
301: QSKRPLFDTI GHNFQAPRLP LLDSGQEVFG RRQQTQLPLF PHHMQQQQQQ QQSMGLPSAK QQKVSSTGDD ASHQFQQAIF DQLYKTAELI EAGNPVHAQG
401: ILARLNHQLS PIGKPFQRAA FYMKEALMSL LHSNAHSFMA FSPISFIFKI GAYKSFSEIS PVLQFANFTC NQALIEAVER FDRIHVIDFD IGFGVQWSSF
501: MQELALRSSG APSLKVTAIV SPSTCDEVEL NFTRENLIQY AKDINVSFEL NVFSIESLNS ASCPLLGQFF DNEAIAVNMP VSSFTNYPSL FPSVLHFVKQ
601: LRPKVVVTLD RICDRIDVPL PTNVVHVLQC YSALLESLDA VNVNLDALQK IERHFIQPAI KKIILGHHHS QEKLPPWRNL FIQSGFSPFT FSNFTEAQAE
701: CLVQRAPVRG FHVERKPSSL VLCWQRKELI SVSTWRC
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.