CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69945	Soybean	plastid	89.07	91.97
KRH28630	Soybean	plastid	65.56	68.6
KRH76844	Soybean	plastid	65.93	67.81
CDX75590	Canola	cytosol	50.19	55.65
AT4G36710.1	Thale cress	cytosol	50.0	55.56
CDX69238	Canola	cytosol	50.0	55.21
CDX72597	Canola	cytosol	47.04	55.1
Bra028100.1-P	Field mustard	cytosol	49.07	53.97
CDY43895	Canola	cytosol	48.89	53.77
CDY13032	Canola	cytosol	48.89	53.55
VIT_04s0023g01380.t01	Wine grape	plastid	52.78	52.97
Solyc02g085600.1.1	Tomato	plastid	48.52	48.88
PGSC0003DMT400033037	Potato	plastid	49.07	48.62
Bra011700.1-P	Field mustard	cytosol	50.0	39.02
GSMUA_Achr3P29970_001	Banana	cytosol	32.78	33.33
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	31.11	31.46
GSMUA_Achr4P07190_001	Banana	plastid	30.0	31.03
KRH18776	Soybean	cytosol	21.3	24.36
KRH64716	Soybean	cytosol	19.63	21.12
KRH76167	Soybean	cytosol	28.7	21.03
KRH53205	Soybean	cytosol	19.26	21.01
KRH75351	Soybean	cytosol	28.7	20.83
KRH65380	Soybean	cytosol	27.96	20.63
KRG88927	Soybean	cytosol	27.78	20.13
KRH43393	Soybean	cytosol	16.48	18.28

Protein Annotations

EntrezGene:100785004	MapMan:15.5.12	EMBL:ACUP02010161	ProteinID:BAP91521.1	EnsemblPlantsGene:GLYMA_16G141300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0048831	UniProt:I1MNH6	InterPro:IPR005202	EnsemblPlants:KRH08304	ProteinID:KRH08304	ProteinID:KRH08304.1
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	InterPro:TF_GRAS	UniParc:UPI000233BBCE
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:29937044..29939337

Molecular Weight (calculated)

60266.3 Da

IEP (calculated)

6.269

GRAVY (calculated)

-0.272

Length

540 amino acids

Sequence
(BLAST)

001: MRVPSSPQPN NNHSPTSNLV LHTNNNPTTT FTYEPTSVLD LCRSPSPEKK LTVPKPEPQH NNNNNNLNLD LDDHVLPNSD WWESIMKDLA LPEDSPTPLL
101: KTNINPSCIP DFPPSSQDPP FDHPQDFTSL SEIYNQNLPY NYPTNTLEHS FYDLSHNHHH NNNNNVNNNN WDFIEELIRA ADCFDSSHFQ LAQAILERLN
201: NRLLRSPMGK PLHRAAFHFK DALQSILAGS NRTSSNRLSS MAEIVQTIKT YKAFSGISPI PMFSVFTTNQ ALLETLNGSS FVHVIDFEIG LGIQYASLMK
301: EIAEKAGAGA SPLLRITAVV PEEYAVESRL VRENLNQFAQ DLGISAQVDF VPLRTFETVS FKAVRFVDGE KIAVLLSPAI FSRLGSNGGS VGAFLADVRR
401: VSPGVVVFVD GEGWTEAAAA ASFRRGVVSS LEFYSMMLES LDASVAAGGG GEWVRRIEMM LLRPKIFAAV EGARRRTPPW REAFYDAAMR PVQLSQFADY
501: QAECLLAKVQ IRGFHVDKRH AELVLCWHER VMVATSAWRC

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.