Factsheet for Bra011700.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75590	Canola	cytosol	70.23	99.79
AT4G36710.1	Thale cress	cytosol	62.28	88.68
Bra028100.1-P	Field mustard	cytosol	51.3	72.3
KRH28630	Soybean	plastid	38.44	51.55
KRH76844	Soybean	plastid	38.58	50.86
KRH08304	Soybean	plastid	39.02	50.0
KRH69945	Soybean	plastid	37.57	49.71
VIT_04s0023g01380.t01	Wine grape	plastid	37.86	48.7
Solyc02g085600.1.1	Tomato	plastid	34.39	44.4
PGSC0003DMT400033037	Potato	plastid	34.68	44.04
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	8.96	34.07
GSMUA_Achr3P29970_001	Banana	cytosol	23.84	31.07
GSMUA_Achr4P07190_001	Banana	plastid	22.11	29.31
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	22.25	28.84
Bra003311.1-P	Field mustard	nucleus	20.09	27.47
Bra000375.1-P	Field mustard	cytosol	20.81	23.72
Bra037319.1-P	Field mustard	cytosol, plastid	19.22	23.67
Bra002894.1-P	Field mustard	cytosol	13.15	19.0

Protein Annotations

MapMan:15.5.12	EnsemblPlantsGene:Bra011700	EnsemblPlants:Bra011700.1	EnsemblPlants:Bra011700.1-P	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0048831	InterPro:IPR005202	UniProt:M4D5E3	PFAM:PF03134	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	InterPro:TB2_DP1_HVA22	InterPro:TF_GRAS	UniParc:UPI00025469B5
SEG:seg	:	:	:	:	:

Description

AT4G36710 (E=5e-216) | transcription factor

Coordinates

chrA01:-:979768..982914

Molecular Weight (calculated)

77067.8 Da

IEP (calculated)

4.994

GRAVY (calculated)

-0.108

Length

692 amino acids

Sequence
(BLAST)

001: MKVQASSPQD NQPSNTNSTD NNNNNNQLPS MDEHVMRSMD WDSIMKELEL DDDSTPNPLK TEFTTTDSAI GPLYAVDSNL PGFPDQIQPS DFDSSDAYQN
101: QTTGYGFTSL DSVDNGGGFD FVEDLIRVVD CVESDELQLA QVILSRLNQR LRSPAGRPLQ RAAFYFKEAL GSLLTGSNRN QTRLLSSWTE IVQKIRAVKE
201: FSGISPIPLF SHFTANQAIL DSLNSQTSSS PFVHVVDFDV GFGGQYASLM REIAEKSISS GFLRVTAVVA EECAVETRLV KENLTQFAAE MKIRFQIEFV
301: LMKTFEMLSF KAIRFVDGER TVVLISPAIF RRLSGIAEFV TNLRRVSPKV VVFVDSEGWT EIAGAGSFRR EFVTALEFYT MVLESLDAAA PPGDLVKKIV
401: EAFVLRPKIV AAVETAGDRR NVGEMTWREA FCGAGMRSIQ LSQFAIFQAE CLLEKAQVRG FHVAKRQEEL VLCWHGRALV ATSAWSGFAS QIPSMALLGS
501: GFTREVGLRV LLSPLGSNIV LRTACCSIGI GLPVYSTFKA IENRDQSAER KWLIYWAAYG SFSLVEVFTD KLISWFPLYY HAKFAFLVWL QLPTIDGAKQ
601: IYNNRLRPFL IRHQVSVDRL VDGVYGEMVK VVRTHQGGIR LVRSIIIKIL GSGNEAAPPS ERQEETPNIS PEPEPSTATI RDLEESESDH ED

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.