Factsheet for GSMUA_Achr4P03460_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P29970_001	Banana	cytosol	73.22	73.63
GSMUA_Achr4P07190_001	Banana	plastid	63.48	64.94
CDY13032	Canola	cytosol	30.9	33.47
VIT_04s0023g01380.t01	Wine grape	plastid	33.52	33.27
CDY43895	Canola	cytosol	30.52	33.2
Bra028100.1-P	Field mustard	cytosol	30.52	33.2
KRH69945	Soybean	plastid	31.84	32.5
KRH28630	Soybean	plastid	31.09	32.17
CDX75590	Canola	cytosol	29.03	31.83
KRH76844	Soybean	plastid	31.27	31.81
CDX69238	Canola	cytosol	28.65	31.29
CDX72597	Canola	cytosol	26.97	31.24
KRH08304	Soybean	plastid	31.46	31.11
Solyc02g085600.1.1	Tomato	plastid	31.09	30.97
PGSC0003DMT400033037	Potato	plastid	31.09	30.46
AT4G36710.1	Thale cress	cytosol	27.53	30.25
GSMUA_Achr6P36740_001	Banana	cytosol	23.41	26.21
GSMUA_Achr1P05940_001	Banana	plastid	25.28	25.57
GSMUA_Achr5P20860_001	Banana	cytosol	25.66	24.73
GSMUA_Achr11P...	Banana	cytosol	26.59	23.87
GSMUA_Achr8P11160_001	Banana	cytosol	28.09	22.49
Bra011700.1-P	Field mustard	cytosol	28.84	22.25
GSMUA_Achr1P26740_001	Banana	cytosol	20.41	20.6
GSMUA_Achr11P...	Banana	cytosol	26.59	20.52

Protein Annotations

EnsemblPlants:GSMUA_Achr4P03460_001	EnsemblPlants:GSMUA_Achr4T03460_001	EnsemblPlantsGene:GSMUA_Achr4G03460_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI0002950D2E
UniProt:M0SKR3	MapMan:15.5.12	:	:	:	:

Description

Putative Scarecrow-like protein 15 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03460_001]

Coordinates

chr4:-:2740817..2742421

Molecular Weight (calculated)

56731.5 Da

IEP (calculated)

6.651

GRAVY (calculated)

-0.061

Length

534 amino acids

Sequence
(BLAST)

001: MKHSKPLTDP PQQQQQPAAH RHFALVSKPL LDSSTHPDTN NNAFAPSLFY EPTSVLDAHL SSSPATAPAP AGAGDLPLLS WAGGGGGGSD AHYQHHHHLP
101: TSDDWDSASW FLSERYDLSP FPDDTNHPFL DSSFDVHFDP FAATAADPIP SPAPSFDRSQ LDSLIRAAHC VESRDFATAH VILSRLNHHI PSAAVSSFHR
201: ALSLFKEALL ALLRPSTAEP PLSAAELVRH IAAHKAFADL SPVPHFGTFT VTQTLIEALD GGTRSIHLID FDLGLGGHWS SFAQELAARC RASRSSPPAV
301: RITAVVAEES GETALAAENL RDFARSLSIS FAVNFVRIGG LGTLALSGIR LAGAGEPTAV VLTPSVFRIL GRDAAPESTA SLLRFIRRAS PRVVLFVDAE
401: GGSAGSAVGP HPAPSLRRTV AAGVEHFAAV LESVEATAAA TGAGEEAVRR IERAVVRPLV VGTVGGWAGR PGPWREVFAG AGWSRAPFSE STESQAEWLV
501: LRAPVEGYRV SRMDGALVLS WRGRELSSTS AWRC

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.