CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G36710.1	Thale cress	cytosol	86.98	82.51
CDX75590	Canola	cytosol	84.38	79.88
CDX69238	Canola	cytosol	84.38	79.55
CDY43895	Canola	cytosol	73.54	69.04
CDY13032	Canola	cytosol	73.75	68.97
KRH28630	Soybean	plastid	54.45	48.64
KRH76844	Soybean	plastid	54.88	48.19
KRH08304	Soybean	plastid	55.1	47.04
KRH69945	Soybean	plastid	52.93	46.65
VIT_04s0023g01380.t01	Wine grape	plastid	52.71	45.17
Solyc02g085600.1.1	Tomato	plastid	49.02	42.16
PGSC0003DMT400033037	Potato	plastid	49.24	41.65
GSMUA_Achr3P29970_001	Banana	cytosol	34.49	29.94
GSMUA_Achr4P07190_001	Banana	plastid	31.89	28.16
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	31.24	26.97
CDX95633	Canola	cytosol	29.72	24.73
CDX89065	Canola	nucleus	29.07	24.36
CDY56248	Canola	cytosol	31.02	23.79
CDY48367	Canola	cytosol	29.07	23.76
CDY67934	Canola	cytosol	30.8	23.75
CDX83398	Canola	cytosol	29.72	23.22
CDY63061	Canola	cytosol, plastid	27.77	22.78
CDY63062	Canola	cytosol, plastid	27.77	22.78
CDY45672	Canola	cytosol	20.61	19.43
CDY17336	Canola	cytosol	20.61	19.04

Protein Annotations

MapMan:15.5.12	GO:A0A078C6X6	EnsemblPlants:CDX72597	ProteinID:CDX72597	ProteinID:CDX72597.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00100141001	InterPro:IPR005202	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	UniProt:Q6DLS1	InterPro:TF_GRAS	UniParc:UPI00003E2294
SEG:seg	:	:	:	:	:

Description

BnaC07g46190DBnaC07g46190D protein [Source:UniProtKB/TrEMBL;Acc:Q6DLS1]

Coordinates

chrLK031796:+:2106436..2107870

Molecular Weight (calculated)

51222.9 Da

IEP (calculated)

4.924

GRAVY (calculated)

-0.065

Length

461 amino acids

Sequence
(BLAST)

001: MKLQASSPQD NQPSNTTNNS TDSNHLSMDE HAMRSMDWDS IMKELEVDDD SAPYQLQPSS FNLPVFPDID SSDVYPGPNQ ITGYGFNSLD SVDNGGFDYI
101: EDLIRVVDCI ESDELHLAHV VLSQLNQRLQ TSAGRPLQRA AFYFKEALGS LLTGTNRNQL FSWSDIVQKI RAIKEFSGIS PIPLFSHFTA NQAILDSLSS
201: QSSSPFVHVV DFEIGFGGQY ASLMREIAEK SANGGFLRVT AVVAEDCAVE TRLVKENLTQ FAAEMKIRFQ IEFVLMKTFE ILSFKAIRFV DGERTVVLIS
301: PAIFRRVIGI AEFVNNLGRV SPNVVVFVDS EGCTETAGSG SFRREFVSAF EFYTMVLESL DAAAPPGDLV KKIVETFLLR PKISAAVETA ANRRSAGQMT
401: WREMLCAAGM RPVQLSQFAD FQAECLLEKA QVRGFHVAKR QGELVLCWHG RALVATSAWR F

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.