CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003311.1-P	Field mustard	nucleus	82.2	97.63
CDY67934	Canola	cytosol	95.67	96.15
CDX95633	Canola	cytosol	74.38	80.69
AT2G45160.1	Thale cress	cytosol	84.86	79.69
CDX83398	Canola	cytosol	77.54	78.98
CDX89065	Canola	nucleus	55.91	61.09
CDY48367	Canola	cytosol	55.91	59.57
CDY63062	Canola	cytosol, plastid	39.93	42.7
CDY63061	Canola	cytosol, plastid	39.93	42.7
Zm00001d022034_P001	Maize	cytosol	19.8	38.89
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	48.25	37.42
GSMUA_Achr6P36740_001	Banana	cytosol	29.12	36.69
KRH76167	Soybean	cytosol	44.09	35.96
KRG88927	Soybean	cytosol	44.09	35.57
Os10t0551200-01	Rice	cytosol	23.46	35.43
GSMUA_Achr1P05940_001	Banana	plastid	31.11	35.42
KRH75351	Soybean	cytosol	43.76	35.35
KRH65380	Soybean	cytosol	42.93	35.25
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	44.09	34.51
Solyc01g090950.2.1	Tomato	cytosol	43.93	34.33
Zm00001d047957_P001	Maize	cytosol	7.15	33.33
GSMUA_Achr5P20860_001	Banana	cytosol	30.62	33.21
GSMUA_Achr11P...	Banana	cytosol	32.45	32.77
Os06t0105350-00	Rice	plastid	26.46	32.52
Zm00001d045589_P001	Maize	cytosol	26.96	32.4
TraesCS7D01G011400.1	Wheat	plastid	27.95	31.58
EER87695	Sorghum	cytosol, plastid	26.79	31.38
TraesCS4A01G482000.1	Wheat	plastid	28.29	31.31
CDX72597	Canola	cytosol	23.79	31.02
Zm00001d027292_P001	Maize	peroxisome	24.46	30.56
Zm00001d035873_P001	Maize	cytosol, plastid	14.48	30.42
CDX75590	Canola	cytosol	24.46	30.18
GSMUA_Achr8P11160_001	Banana	cytosol	33.28	29.98
Os03t0103400-01	Rice	cytosol	23.29	29.54
CDX69238	Canola	cytosol	23.96	29.45
Os02t0662700-01	Rice	cytosol	34.61	29.34
TraesCS6B01G277400.1	Wheat	mitochondrion	34.11	29.29
TraesCS6D01G229400.1	Wheat	mitochondrion	34.44	29.28
TraesCS7A01G014200.1	Wheat	plastid	28.29	29.26
TraesCS6A01G247200.1	Wheat	mitochondrion	34.11	29.12
CDY43895	Canola	cytosol	23.63	28.92
Zm00001d051387_P001	Maize	cytosol	33.94	28.81
CDY13032	Canola	cytosol	23.63	28.8
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	33.61	28.73
HORVU1Hr1G053510.1	Barley	plastid	29.45	28.55
TraesCS1D01G212800.1	Wheat	cytosol	29.45	28.5
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	29.62	28.48
EES11245	Sorghum	cytosol, nucleus, peroxisome	34.11	28.47
Zm00001d002718_P001	Maize	cytosol	34.11	28.43
TraesCS1B01G223400.1	Wheat	cytosol, plastid	29.45	28.37
EES05768	Sorghum	cytosol	33.78	28.35
Os02t0663100-01	Rice	cytosol	33.61	28.25
Os04t0555000-01	Rice	cytosol	33.11	27.99
Zm00001d026158_P001	Maize	cytosol	33.28	27.86
GSMUA_Achr11P...	Banana	cytosol	31.61	27.46
EER91968	Sorghum	cytosol, mitochondrion	29.12	27.34
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	28.95	27.32
Zm00001d018956_P001	Maize	plastid	6.49	27.27
TraesCS4B01G367300.1	Wheat	cytosol	28.95	27.1
TraesCS4D01G360200.1	Wheat	cytosol	28.79	26.95
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	31.61	26.91
Zm00001d029855_P001	Maize	mitochondrion	28.62	26.67
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	28.12	26.49
Zm00001d027569_P001	Maize	plastid	13.31	25.56
Zm00001d022162_P001	Maize	cytosol	6.66	24.24
Zm00001d042852_P001	Maize	cytosol	9.48	23.17
OQU85680	Sorghum	mitochondrion	24.46	22.72
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	12.31	20.9
CDY45672	Canola	cytosol	16.97	20.86
Zm00001d031615_P001	Maize	cytosol	9.15	20.22
CDY17336	Canola	cytosol	16.64	20.04

Protein Annotations

EnsemblPlants:CDY56248	EnsemblPlantsGene:GSBRNA2T00018011001	GO:A0A078IWW3	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF11	PFAM:PF03514	PFscan:PS50985	ProteinID:CDY56248	ProteinID:CDY56248.1
SEG:seg	UniParc:UPI0004EE3553	UniProt:A0A078IWW3	MapMan:15.5.12	:	:

Description

BnaA07g37990DBnaA07g37990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWW3]

Coordinates

chrLK033471:-:43638..45443

Molecular Weight (calculated)

66389.9 Da

IEP (calculated)

5.126

GRAVY (calculated)

-0.322

Length

601 amino acids

Sequence
(BLAST)

001: MPLSFERFQG EGAFGVVSSL YSDPQKIWFS QDKTGAEQDL GYVVGGVLPE PTSVLDALRS PSPLASHSST TTTMTLSSSH GGGTVTAATT AGDDKCSQMG
101: LDDLDDGGQE QSILRLIMDP GQGFGVFDPG FGFGSGSVPV NPLLSSSFPY QEELTFSNPP SSPPAKRFNS GSHQPVFPFP DPDPGHDPFL VRRQQQFQFP
201: FQFHQQQQLP SSSSSLPPVP PPGTAGDDQT VIIEQLFNAA ELIGNNNNNG DHTALAQGIL ARLNHHLSYS NNNNNKNPPF QRAASHITES LSLINSSYPP
301: LISPENLIFR IAAYRTFSET SPFLQFVNFT ANQSILESCN DELGFDRIHI IDFDVGYGGQ WSSLMQELAS RRRNRASSLK ITVFAPPPST VSDEFELRFT
401: EENLRSFAGE VKIPFEIELL SLELLLNPAY WPVSLRSSEK EAVAVNLPVN SVVSGYLPLI LRFLKQISPN VVVCSDRGCD RNDAPFPNAV IHALQYHTTL
501: LESLDANQGH EDESVERFWV QPSIEKLLMK RHRWIERSPP WRSLFAQCGF SPASLSQTAE AQAECLLQRS PVRGFHVEKR QGSLVMCWQR KELVTVSTWK
601: C

Best Arabidopsis Sequence Match ( AT2G45160.1 )
(BLAST)

001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC

Arabidopsis Description

SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.