CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43895	Canola	cytosol	97.97	98.37
Bra028100.1-P	Field mustard	cytosol	97.77	98.17
CDX72597	Canola	cytosol	68.97	73.75
CDX75590	Canola	cytosol	72.01	72.9
CDX69238	Canola	cytosol	72.21	72.8
KRH76844	Soybean	plastid	54.36	51.05
KRH28630	Soybean	plastid	53.35	50.97
KRH69945	Soybean	plastid	52.13	49.14
KRH08304	Soybean	plastid	53.55	48.89
VIT_04s0023g01380.t01	Wine grape	plastid	52.94	48.51
Solyc02g085600.1.1	Tomato	plastid	49.7	45.71
PGSC0003DMT400033037	Potato	plastid	49.9	45.14
GSMUA_Achr3P29970_001	Banana	cytosol	36.11	33.52
GSMUA_Achr4P07190_001	Banana	plastid	32.86	31.03
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	33.47	30.9
CDX89065	Canola	nucleus	28.4	25.45
CDX95633	Canola	cytosol	28.6	25.45
CDY63061	Canola	cytosol, plastid	28.19	24.73
CDY63062	Canola	cytosol, plastid	28.19	24.73
CDY48367	Canola	cytosol	28.19	24.65
CDX83398	Canola	cytosol	28.4	23.73
CDY56248	Canola	cytosol	28.8	23.63
CDY67934	Canola	cytosol	28.4	23.41
CDY45672	Canola	cytosol	18.86	19.02
CDY17336	Canola	cytosol	19.07	18.84

Protein Annotations

EnsemblPlants:CDY13032	EnsemblPlantsGene:GSBRNA2T00070834001	GO:A0A078FJA7	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	PFAM:PF03514	PFscan:PS50985	ProteinID:CDY13032	ProteinID:CDY13032.1
SEG:seg	UniParc:UPI0004EBD052	UniProt:A0A078FJA7	MapMan:15.5.12	:	:

Description

BnaC07g03310DBnaC07g03310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJA7]

Coordinates

chrLK032030:-:565121..566862

Molecular Weight (calculated)

54362.8 Da

IEP (calculated)

5.695

GRAVY (calculated)

-0.091

Length

493 amino acids

Sequence
(BLAST)

001: MRVPASSNSN SGGKNLVVYD EPTSVLGLRR SPTPTTVEEK PLVSAASGGD NQFPSDDHAM RSMDWDSIMR ELELDDDSTP NLKPNFPPPA HFAVVDPPLP
101: VFPDQLNPAE YGYDSNSNNG GGGGFDIIED LIRVVDCVDS DELQHAHVIL SRLNQRLRSP AGRPLLRAAF YFKEALGSLL SGSNRNQNRL TSWTEIVERI
201: RAIKEFSGIS PIPLFSHFTA NQAILDSLHQ SSSPFAHIVD FEIGFGGQYA SLMREIADKS SATGGFLRVT AVVPEESAVE TRLVKENLVQ FAADLKIRFQ
301: IDFVLMRTFE MLSFKAIRFV EGERTVVLIS PVIFRRLNGI SSFVNDLRRV SPNVVVFVDS EGWNGISGAG SFQREFVSGF EFYTMVLESL DAAAPSGDLV
401: KKIIEGFVLR PKIAAAVEAA AVNKRQGGGE MTWREAFCAA GMRMVPLSQF VDFQAECLVE KAQVRGFHVA KRQGELVLCW HGRPLVATSA WRF

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.