CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28630	Soybean	plastid	92.0	93.6
KRH69945	Soybean	plastid	67.05	67.3
KRH08304	Soybean	plastid	67.81	65.93
CDX75590	Canola	cytosol	51.05	55.03
Bra028100.1-P	Field mustard	cytosol	51.43	54.99
CDX72597	Canola	cytosol	48.19	54.88
CDX69238	Canola	cytosol	51.05	54.81
CDY43895	Canola	cytosol	51.24	54.79
CDY13032	Canola	cytosol	51.05	54.36
AT4G36710.1	Thale cress	cytosol	50.29	54.32
VIT_04s0023g01380.t01	Wine grape	plastid	55.24	53.9
PGSC0003DMT400033037	Potato	plastid	49.52	47.71
Solyc02g085600.1.1	Tomato	plastid	48.57	47.57
Bra011700.1-P	Field mustard	cytosol	50.86	38.58
GSMUA_Achr3P29970_001	Banana	cytosol	34.67	34.27
GSMUA_Achr4P07190_001	Banana	plastid	32.0	32.18
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	31.81	31.27
KRH18776	Soybean	cytosol	20.76	23.09
KRH53205	Soybean	cytosol	20.95	22.22
KRH64716	Soybean	cytosol	21.14	22.11
KRH76167	Soybean	cytosol	28.76	20.49
KRH65380	Soybean	cytosol	28.19	20.22
KRH75351	Soybean	cytosol	28.38	20.03
KRG88927	Soybean	cytosol	28.0	19.73
KRH43393	Soybean	cytosol	16.38	17.66

Protein Annotations

EntrezGene:100807470	MapMan:15.5.12	EMBL:ACUP02000644	EnsemblPlantsGene:GLYMA_01G177200	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048831
UniProt:I1J8X5	InterPro:IPR005202	EnsemblPlants:KRH76844	ProteinID:KRH76844	ProteinID:KRH76844.1	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	InterPro:TF_GRAS	UniParc:UPI0002336DC6	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:51367271..51369347

Molecular Weight (calculated)

58691.7 Da

IEP (calculated)

5.553

GRAVY (calculated)

-0.115

Length

525 amino acids

Sequence
(BLAST)

001: MRVPVPSSPQ ANPKPTNNVV RTIALPNLNN STTPPTGLCY EPTSVLDLCR SPSPGTEKPT TDHSVLVTNS QDYLDLEDHA LHNLDWDSIM KDLGLHDDSA
101: TPVLKTFLHP DDDDDDDNNN NPSCDDFTLF DHALEFTTLS DIYSNQNFAF DFNHLPHDFN HLNGFDFIEE LIRAADCFDT KQLHVAQLIL ERLNQRLRSP
201: VGKPLHRAAF YLKEALQSLL SGSNRTPRIS SLVEIVHSIR TFKAFSGISP IPMFSIFTTN QIVLDHAASS FMHVIDFDIG LGIQYASLMK EIAEKAADSP
301: VLRITAVVPE EYAVESTLVR DNLAQFALDL RIRVQVEFVP LRTFENLSFK AVKFVNGENT AVLLSPAIFR HLGNAAAFLA DVRRISPSVV VFVDGEGWAE
401: TATASAASFR RGVVSSLEYY SMMLESLDAS TVGGGGEWVR RIEMMQLRPK ILAAVESAWR RVPPWREAFY GAGMRPVQLS QFADFQAECL LAKSQIRGFH
501: VAKRQNELVL FWHDRAIVAT SAWRC

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.