Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76167 | Soybean | cytosol | 93.58 | 92.94 |
| KRH75351 | Soybean | cytosol | 54.23 | 53.36 |
| KRG88927 | Soybean | cytosol | 54.1 | 53.15 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 38.39 | 50.36 |
| Bra037319.1-P | Field mustard | cytosol, plastid | 37.98 | 49.47 |
| CDY63061 | Canola | cytosol, plastid | 37.98 | 49.47 |
| CDY63062 | Canola | cytosol, plastid | 37.98 | 49.47 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 52.19 | 49.29 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 50.14 | 47.79 |
| Solyc01g090950.2.1 | Tomato | cytosol | 50.0 | 47.59 |
| Zm00001d022034_P001 | Maize | cytosol | 19.13 | 45.75 |
| CDX95633 | Canola | cytosol | 34.15 | 45.13 |
| Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 11.2 | 45.05 |
| CDX89065 | Canola | nucleus | 33.74 | 44.91 |
| CDY48367 | Canola | cytosol | 34.02 | 44.15 |
| AT3G60630.1 | Thale cress | cytosol | 37.02 | 43.5 |
| Bra003311.1-P | Field mustard | nucleus | 30.05 | 43.48 |
| CDX83398 | Canola | cytosol | 34.84 | 43.22 |
| CDY67934 | Canola | cytosol | 35.25 | 43.14 |
| CDY56248 | Canola | cytosol | 35.25 | 42.93 |
| Bra000375.1-P | Field mustard | cytosol | 34.97 | 42.17 |
| AT2G45160.1 | Thale cress | cytosol | 36.2 | 41.41 |
| Os10t0551200-01 | Rice | cytosol | 21.99 | 40.45 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 30.19 | 39.89 |
| GSMUA_Achr11P... | Banana | cytosol | 31.97 | 39.33 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 25.55 | 39.2 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 27.32 | 37.88 |
| Zm00001d045589_P001 | Maize | cytosol | 24.59 | 36.0 |
| Zm00001d027292_P001 | Maize | peroxisome | 23.36 | 35.55 |
| TraesCS7D01G011400.1 | Wheat | plastid | 25.14 | 34.59 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 29.1 | 34.3 |
| HORVU1Hr1G053510.1 | Barley | plastid | 28.96 | 34.19 |
| Zm00001d047957_P001 | Maize | cytosol | 6.01 | 34.11 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 29.1 | 34.08 |
| TraesCS4A01G482000.1 | Wheat | plastid | 25.27 | 34.07 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 31.01 | 34.03 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 28.96 | 33.97 |
| Os06t0105350-00 | Rice | plastid | 22.4 | 33.54 |
| GSMUA_Achr11P... | Banana | cytosol | 31.56 | 33.38 |
| EER87695 | Sorghum | cytosol, plastid | 23.36 | 33.33 |
| Os03t0103400-01 | Rice | cytosol | 21.45 | 33.12 |
| Zm00001d022162_P001 | Maize | cytosol | 7.38 | 32.73 |
| Os02t0662700-01 | Rice | cytosol | 31.56 | 32.58 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 12.7 | 32.52 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 31.97 | 32.5 |
| Zm00001d051387_P001 | Maize | cytosol | 31.42 | 32.49 |
| Os02t0663100-01 | Rice | cytosol | 31.56 | 32.31 |
| Zm00001d002718_P001 | Maize | cytosol | 31.69 | 32.18 |
| Zm00001d026158_P001 | Maize | cytosol | 31.56 | 32.17 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 30.87 | 32.1 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 27.87 | 32.03 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 30.74 | 32.01 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 30.6 | 32.0 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 30.87 | 31.97 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 28.01 | 31.93 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 28.01 | 31.93 |
| EES05768 | Sorghum | cytosol | 31.15 | 31.84 |
| TraesCS7A01G014200.1 | Wheat | plastid | 25.14 | 31.67 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 27.6 | 31.66 |
| Os04t0555000-01 | Rice | cytosol | 30.46 | 31.36 |
| Zm00001d029855_P001 | Maize | mitochondrion | 27.46 | 31.16 |
| EER91968 | Sorghum | cytosol, mitochondrion | 27.05 | 30.94 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 29.78 | 30.88 |
| Zm00001d018956_P001 | Maize | plastid | 5.6 | 28.67 |
| KRH69945 | Soybean | plastid | 20.36 | 28.49 |
| KRH76844 | Soybean | plastid | 20.22 | 28.19 |
| KRH08304 | Soybean | plastid | 20.63 | 27.96 |
| KRH28630 | Soybean | plastid | 19.67 | 27.91 |
| OQU85680 | Sorghum | mitochondrion | 23.77 | 26.89 |
| Zm00001d027569_P001 | Maize | plastid | 11.48 | 26.84 |
| Zm00001d042852_P001 | Maize | cytosol | 8.74 | 26.02 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 11.48 | 23.73 |
| KRH18776 | Soybean | cytosol | 15.3 | 23.73 |
| Zm00001d031615_P001 | Maize | cytosol | 8.61 | 23.16 |
| KRH53205 | Soybean | cytosol | 15.03 | 22.22 |
| KRH64716 | Soybean | cytosol | 14.48 | 21.12 |
| KRH43393 | Soybean | cytosol | 13.52 | 20.33 |
Protein Annotations
| EntrezGene:100794596 | MapMan:15.5.12 | EMBL:ACUP02001336 | EnsemblPlantsGene:GLYMA_03G031800 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0030154 | GO:GO:0040007 | GO:GO:0043565 | GO:GO:0048768 | GO:GO:0051301 | UniProt:I1JKU2 |
| InterPro:IPR005202 | EnsemblPlants:KRH65380 | ProteinID:KRH65380 | ProteinID:KRH65380.1 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF11 | InterPro:TF_GRAS | UniParc:UPI0002339C05 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr3:-:3602609..3605654
Molecular Weight (calculated)
81297.4 Da
IEP (calculated)
5.984
GRAVY (calculated)
-0.259
Length
732 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVMPLPFEE FQGKGVLDFS SASDSFSVLL HNPQPKWTID KEDYCYVGSI TEPTSVLGSR RSLSPPTSSS TMSSSLGSSN NSTSKGGGGT SANTTNNPTP
101: PSDYNNNNPP QESSPEKCGI RMEDWECQDQ SILRLIMGDV EDPSAGLSKL LQSTACGSQS ADFNAGFGVV DQQGLNMNMN MNMVGGNIDP NYPAGFPFIA
201: ENMDGQNAKA GSGTGQVSES VVFSANNPLM VSSSVSPGVF TSQQQQQEFG VVDEKPQVIN PQFMLNQNQV QFSDNPSFFL PLMYPQVQEQ QVFSQHQAKH
301: HLFDTIGHNF QAPRLSLLDS GQEVFGRRQQ TQLPLFPHHM QQQQQQQSMV MPSTKQQKVS STGDDASHQL QQAIFDQLYK TAELIEAGNP VHAQGILARL
401: NHQLSPIGRP FQRAAFYMKE ALMSLLHSNA HSFMAFSPIS FIFKIGAYKS FSEISPVLQF ANFTCNQALI EAVERSDRIH VIDFDIGFGV QWSSFMQEIA
501: LRSSGAPSLK VTAIVSPSTC DEVELNFTRE NLIQYAKDIN VSFEFNVLSI ESLNSPSCPL LGKFFDNEAI VVNMPVSSFT NYPSLFPSVL HFVKQLRPKV
601: VVTLDRICDQ MDVPLPTNVV HVLQCYSALL ESLDAVNVNL DVLQKIERHF IQPAIKKIIL GHHHFQEKLP PWRNLFMQSG FSPFTFSNFT EAQAECLVQR
701: APVRGFHVER KPSSLVLCWQ KKELISVSTW RC
101: PSDYNNNNPP QESSPEKCGI RMEDWECQDQ SILRLIMGDV EDPSAGLSKL LQSTACGSQS ADFNAGFGVV DQQGLNMNMN MNMVGGNIDP NYPAGFPFIA
201: ENMDGQNAKA GSGTGQVSES VVFSANNPLM VSSSVSPGVF TSQQQQQEFG VVDEKPQVIN PQFMLNQNQV QFSDNPSFFL PLMYPQVQEQ QVFSQHQAKH
301: HLFDTIGHNF QAPRLSLLDS GQEVFGRRQQ TQLPLFPHHM QQQQQQQSMV MPSTKQQKVS STGDDASHQL QQAIFDQLYK TAELIEAGNP VHAQGILARL
401: NHQLSPIGRP FQRAAFYMKE ALMSLLHSNA HSFMAFSPIS FIFKIGAYKS FSEISPVLQF ANFTCNQALI EAVERSDRIH VIDFDIGFGV QWSSFMQEIA
501: LRSSGAPSLK VTAIVSPSTC DEVELNFTRE NLIQYAKDIN VSFEFNVLSI ESLNSPSCPL LGKFFDNEAI VVNMPVSSFT NYPSLFPSVL HFVKQLRPKV
601: VVTLDRICDQ MDVPLPTNVV HVLQCYSALL ESLDAVNVNL DVLQKIERHF IQPAIKKIIL GHHHFQEKLP PWRNLFMQSG FSPFTFSNFT EAQAECLVQR
701: APVRGFHVER KPSSLVLCWQ KKELISVSTW RC
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.