Factsheet for Bra000375.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83398	Canola	cytosol	94.56	97.29
Bra003311.1-P	Field mustard	nucleus	66.23	79.45
AT2G45160.1	Thale cress	cytosol	79.9	75.78
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	21.25	70.88
Bra037319.1-P	Field mustard	cytosol, plastid	39.21	42.35
Zm00001d022034_P001	Maize	cytosol	19.93	39.54
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	46.79	36.65
Os10t0551200-01	Rice	cytosol	23.89	36.43
KRH76167	Soybean	cytosol	43.49	35.82
GSMUA_Achr6P36740_001	Banana	cytosol	28.01	35.64
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	44.65	35.29
Solyc01g090950.2.1	Tomato	cytosol	44.65	35.24
GSMUA_Achr1P05940_001	Banana	plastid	30.64	35.23
KRH65380	Soybean	cytosol	42.17	34.97
KRG88927	Soybean	cytosol	42.5	34.63
KRH75351	Soybean	cytosol	42.01	34.27
Zm00001d045589_P001	Maize	cytosol	28.17	34.2
Zm00001d047957_P001	Maize	cytosol	7.25	34.11
Os06t0105350-00	Rice	plastid	27.35	33.95
EER87695	Sorghum	cytosol, plastid	27.84	32.94
TraesCS7D01G011400.1	Wheat	plastid	28.5	32.52
GSMUA_Achr11P...	Banana	cytosol	31.8	32.44
GSMUA_Achr5P20860_001	Banana	cytosol	29.16	31.95
TraesCS4A01G482000.1	Wheat	plastid	28.34	31.68
Zm00001d035873_P001	Maize	cytosol, plastid	14.66	31.12
Zm00001d027292_P001	Maize	peroxisome	24.05	30.35
TraesCS7A01G014200.1	Wheat	plastid	28.5	29.78
GSMUA_Achr8P11160_001	Banana	cytosol	32.29	29.39
HORVU1Hr1G053510.1	Barley	plastid	29.98	29.35
Os03t0103400-01	Rice	cytosol	22.9	29.32
TraesCS1D01G212800.1	Wheat	cytosol	29.98	29.31
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	30.15	29.28
TraesCS1B01G223400.1	Wheat	cytosol, plastid	29.98	29.17
Bra028100.1-P	Field mustard	cytosol	23.39	28.92
TraesCS6B01G277400.1	Wheat	mitochondrion	32.78	28.43
TraesCS6A01G247200.1	Wheat	mitochondrion	32.95	28.41
EES11245	Sorghum	cytosol, nucleus, peroxisome	33.61	28.33
Os02t0662700-01	Rice	cytosol	32.95	28.21
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	32.62	28.16
Zm00001d002718_P001	Maize	cytosol	33.44	28.16
TraesCS6D01G229400.1	Wheat	mitochondrion	32.78	28.15
Os04t0555000-01	Rice	cytosol	32.95	28.13
EER91968	Sorghum	cytosol, mitochondrion	29.65	28.12
Zm00001d051387_P001	Maize	cytosol	32.78	28.11
EES05768	Sorghum	cytosol	32.95	27.93
Zm00001d026158_P001	Maize	cytosol	32.78	27.72
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	29.0	27.63
TraesCS4B01G367300.1	Wheat	cytosol	29.16	27.57
GSMUA_Achr11P...	Banana	cytosol	31.3	27.46
Zm00001d029855_P001	Maize	mitochondrion	29.0	27.29
Os02t0663100-01	Rice	cytosol	32.13	27.27
Zm00001d018956_P001	Maize	plastid	6.43	27.27
TraesCS4D01G360200.1	Wheat	cytosol	28.83	27.26
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	28.5	27.12
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	30.81	26.49
Zm00001d027569_P001	Maize	plastid	13.01	25.24
Zm00001d022162_P001	Maize	cytosol	6.59	24.24
Zm00001d042852_P001	Maize	cytosol	9.39	23.17
OQU85680	Sorghum	mitochondrion	24.38	22.87
Bra011700.1-P	Field mustard	cytosol	23.72	20.81
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	11.86	20.34
Zm00001d031615_P001	Maize	cytosol	9.06	20.22
Bra002894.1-P	Field mustard	cytosol	15.32	19.42

Protein Annotations

EnsemblPlants:Bra000375.1	EnsemblPlants:Bra000375.1-P	EnsemblPlantsGene:Bra000375	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF11	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000253FE37
UniProt:M4C847	MapMan:15.5.12	:	:	:	:

Description

AT2G45160 (E=8e-236) | scarecrow transcription factor family protein

Coordinates

chrA03:-:10806802..10808625

Molecular Weight (calculated)

66716.7 Da

IEP (calculated)

5.228

GRAVY (calculated)

-0.252

Length

607 amino acids

Sequence
(BLAST)

001: MPLSFERFQG EGVFSVSSFY SDSHKTRFNQ DKTGIEEERE DLGYVFRGGL QEPTSVLDAL RSPSPLASHS STTTNTTLSS SHGGGGGPPP PPPPEAPAGD
101: DKCSQISLDD LDGVISPDQE QSILRLIMDP GSGFGVLDPG FGFGSGSAPV SDGSNPLLSC GFPFNEQTHQ IPNQESLFSN PPSSPPTKRF NSGSHQPVFP
201: FSDPVPVQQY QFPVQFHPQQ ISPSSSSSPA AALVPVPVLP PGIANDDQSV IIEQLFNAAE LIATTGDHTI LAQGILARLN HHLSSSYNNK APFHRAASHI
301: SEALLSLVHD AAPPLLTPEI LILRIAAYRT FSETSPFLQF VNFPANQSIL ELGFERIHVI DFDVGYGGQW SSLMQELARK RGSCLKVTVF APPPSSVSDE
401: FELRFTEENL RSFAGELKIP FEMELLSLEL LLNPAYWPLS LRSSEKEAVA VNLPLSSVDS GYLPLILRFL KQISPNVVVC SDRGCDRNDA PFPNAVIHAL
501: QYHTTLLESL DANQSQEDSS VERFWVRPSI EKLLVKRHRW IERSPPWRSL FTQCGFTPAS LSQTAETQAE CLMQRNPVRG FHVEKRQSSL VMCWQRKELV
601: TVSAWKC

Best Arabidopsis Sequence Match ( AT2G45160.1 )
(BLAST)

001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC

Arabidopsis Description

SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.