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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:mitochondrion
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU5Hr1G013230.1
HORVU5Hr1G039960.1
HORVU6Hr1G023720.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 HORVU5Hr1G039960.1 AT1G72030.1 21798944
AT3G60630.1 HORVU6Hr1G023720.1 AT1G72030.1 21798944
AT4G00150.1 HORVU5Hr1G013230.1 AT1G60490.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G212800.1 Wheat cytosol 95.16 95.01
TraesCS1B01G223400.1 Wheat cytosol, plastid 95.48 94.87
TraesCS1A01G209400.1 Wheat mitochondrion, plastid 95.32 94.56
Os10t0551200-01 Rice cytosol 55.0 85.68
Zm00001d022162_P001 Maize cytosol 20.0 75.15
EER91968 Sorghum cytosol, mitochondrion 77.26 74.84
Zm00001d029855_P001 Maize mitochondrion 76.29 73.33
Zm00001d035873_P001 Maize cytosol, plastid 33.23 72.03
Zm00001d042852_P001 Maize cytosol 27.1 68.29
Zm00001d047957_P001 Maize cytosol 14.03 67.44
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 34.68 60.73
HORVU4Hr1G087700.2 Barley cytosol, mitochondrion, peroxisome, plastid 62.1 60.34
Zm00001d027569_P001 Maize plastid 30.0 59.42
Zm00001d031615_P001 Maize cytosol 25.81 58.82
Zm00001d018956_P001 Maize plastid 13.06 56.64
GSMUA_Achr11P... Banana cytosol 40.32 42.02
HORVU6Hr1G063650.1 Barley cytosol, mitochondrion, nucleus, plasma membrane 45.48 40.11
GSMUA_Achr5P20860_001 Banana cytosol 35.48 39.71
GSMUA_Achr8P11160_001 Banana cytosol 41.45 38.53
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 10.97 37.36
VIT_02s0154g00400.t01 Wine grape cytosol 30.48 36.91
AT4G00150.1 Thale cress cytosol, plastid 32.74 36.38
Solyc08g078800.1.1 Tomato plastid 27.42 35.87
GSMUA_Achr11P... Banana cytosol 39.52 35.4
Bra037319.1-P Field mustard cytosol, plastid 31.13 34.34
CDY63062 Canola cytosol, plastid 31.13 34.34
CDY63061 Canola cytosol, plastid 31.13 34.34
CDX95633 Canola cytosol 29.19 32.67
CDX89065 Canola nucleus 28.39 32.0
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 39.19 31.64
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 39.52 31.61
Solyc01g090950.2.1 Tomato cytosol 39.19 31.6
Bra003311.1-P Field mustard nucleus 25.65 31.42
CDX83398 Canola cytosol 29.84 31.36
AT3G60630.1 Thale cress cytosol 30.97 30.82
CDY48367 Canola cytosol 27.9 30.67
CDY67934 Canola cytosol 29.19 30.27
KRH75351 Soybean cytosol 36.13 30.11
KRG88927 Soybean cytosol 36.13 30.07
Bra000375.1-P Field mustard cytosol 29.35 29.98
KRH76167 Soybean cytosol 35.48 29.85
CDY56248 Canola cytosol 28.55 29.45
PGSC0003DMT400012104 Potato plastid 33.06 29.29
KRH65380 Soybean cytosol 34.19 28.96
AT2G45160.1 Thale cress cytosol 29.52 28.59
HORVU4Hr1G020490.26 Barley cytosol 17.42 22.78
HORVU4Hr1G061310.1 Barley cytosol, mitochondrion, plastid 16.77 17.16
Protein Annotations
EnsemblPlants:HORVU1Hr1G053510.1EnsemblPlantsGene:HORVU1Hr1G053510GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRASPANTHER:PTHR31636
PANTHER:PTHR31636:SF125PFAM:PF03514PFscan:PS50985SEG:segUniParc:UPI000296806CUniProt:M0YST5
MapMan:15.5.12:::::
Description
No Description!
Coordinates
chrchr1H:+:395873135..395875994
Molecular Weight (calculated)
65044.5 Da
IEP (calculated)
6.341
GRAVY (calculated)
0.017
Length
620 amino acids
Sequence
(BLAST)
001: MRGMPFAAEG HAGRLQQPKL SGGFWAEPTS VLDRRHSPSP SPPSSASTLS SEVASLVGGG DAKNASPPPP QTWPAGEEVG AAAGVKEEWA HQLAPLDMGL
101: GAGEGWDGTA PSGLAGPDST FLRWIIGGGE DASAGMAGVM DPPALELDHT TSMMSPPTAS LGPSLSPFAP AMEDAKVGPF GHAPSFLLHQ HQHHPQPHAA
201: FFGAHPSFES APPPPKRHHP MAGAPAPKLP GFQGHLAPAG GFFPALKPKA GAANDEVAAT VDQLAEAAKF AEAGDAFGAR EILARLNYRL PAAPAAGTPL
301: LRSAFYFKEA LRLALSPTGE TPAPPASTPY DVVLKLGAYK AFSEVSPVLQ FAHLTCVQAV LDELRGAGCI HVLDFDIGMG EQWASLMQEL AQRRPATALK
401: VTALVSPSSH HPLELQLIHE NLSSFAAELG VFFQFTVFNI DTLDPAELVA IAGGDALAVH LPVGAAHAAA MPAVLRLVKS LGAKVVVSVD RGCDRTELPF
501: AAHLFQAFQS TVFLLESVDA VGTDPDTASK IERFLVQPAV EQCVVGRHRA SIEKAPLPWR AVFASAGFTP VQASTFAESQ AESLLHKVPV RGFRVEKHAP
601: GSLCLYWQRA ELVSVSAWRC
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.