Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G113300.1 | Wheat | cytosol | 93.88 | 93.88 |
| TraesCS4A01G209800.1 | Wheat | cytosol | 93.25 | 93.25 |
| TraesCS4D01G110800.1 | Wheat | cytosol | 93.04 | 93.04 |
| Os11t0160550-00 | Rice | cytosol | 66.24 | 68.11 |
| Zm00001d053163_P001 | Maize | cytosol | 61.6 | 61.73 |
| VIT_04s0044g00620.t01 | Wine grape | cytosol | 29.96 | 35.59 |
| KRH43393 | Soybean | cytosol | 34.18 | 33.26 |
| PGSC0003DMT400010158 | Potato | cytosol | 33.33 | 31.98 |
| Solyc11g005610.1.1 | Tomato | cytosol | 32.91 | 31.71 |
| HORVU4Hr1G061310.1 | Barley | cytosol, mitochondrion, plastid | 26.16 | 20.46 |
| HORVU1Hr1G053510.1 | Barley | plastid | 22.78 | 17.42 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 22.57 | 16.77 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 22.78 | 15.36 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G020490.26 | EnsemblPlantsGene:HORVU4Hr1G020490 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF61 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI00029687D3 | UniProt:M0XFI8 |
| MapMan:15.5.12 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:101454645..101464717
Molecular Weight (calculated)
52150.7 Da
IEP (calculated)
4.752
GRAVY (calculated)
-0.018
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: METMSYPCSP LLSLPTHEES NFFIWSPQVA LHENATIHVD HSTDQQHDNV FLDTAAQHYA NDWQQQDASD VGVFTYCGER ILGQESGNLV AIQEELMEEN
101: SLTDLLLTGA EAVEAGDPRF ALAVFSRLDG LLLGTPENAA AGSFDRLAYH FSQGLRSRIS SASTSCSPPE PLASDRMSVQ QIIQELSPFA KFAHFTANQA
201: ILDATKGDAH VHVVDLNIGE GIQWPSLMSD LARHGGISFH LTAVTADADY SDAVHHASAR WLSEFAESLN LPFQYSSLCL HSDEDLHEFS KNSKGSVIFS
301: CDTTSMPYKL LSKLPALLPA CVELLQPKLM VIIEEELVRI GKEVSLCKAS FVDFFFEALH HFTTVFESLA SCFAGGNQGV CLRLVEREMV GPRIQDFVGQ
401: YGSVTAEVNA PVVLERYGAC DLSGCNVAQA RMLVGLFNRG FEIVHEKGRL MLCWKSRPLT SVSVWAPILK ERSS
101: SLTDLLLTGA EAVEAGDPRF ALAVFSRLDG LLLGTPENAA AGSFDRLAYH FSQGLRSRIS SASTSCSPPE PLASDRMSVQ QIIQELSPFA KFAHFTANQA
201: ILDATKGDAH VHVVDLNIGE GIQWPSLMSD LARHGGISFH LTAVTADADY SDAVHHASAR WLSEFAESLN LPFQYSSLCL HSDEDLHEFS KNSKGSVIFS
301: CDTTSMPYKL LSKLPALLPA CVELLQPKLM VIIEEELVRI GKEVSLCKAS FVDFFFEALH HFTTVFESLA SCFAGGNQGV CLRLVEREMV GPRIQDFVGQ
401: YGSVTAEVNA PVVLERYGAC DLSGCNVAQA RMLVGLFNRG FEIVHEKGRL MLCWKSRPLT SVSVWAPILK ERSS
001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ
Arabidopsis Description
SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.