Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G113300.1 | Wheat | cytosol | 95.57 | 95.57 |
| TraesCS4D01G110800.1 | Wheat | cytosol | 95.36 | 95.36 |
| HORVU4Hr1G020490.26 | Barley | cytosol | 93.25 | 93.25 |
| Os11t0160550-00 | Rice | cytosol | 66.46 | 68.33 |
| Zm00001d053163_P001 | Maize | cytosol | 62.45 | 62.58 |
| VIT_04s0044g00620.t01 | Wine grape | cytosol | 30.59 | 36.34 |
| KRH43393 | Soybean | cytosol | 34.6 | 33.68 |
| PGSC0003DMT400010158 | Potato | cytosol | 33.97 | 32.59 |
| Solyc11g005610.1.1 | Tomato | cytosol | 33.54 | 32.32 |
| TraesCS4A01G088500.1 | Wheat | cytosol | 27.64 | 23.35 |
| TraesCS4A01G482000.1 | Wheat | plastid | 23.21 | 20.26 |
| TraesCS7A01G014200.1 | Wheat | plastid | 23.42 | 19.11 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 23.21 | 17.6 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 23.21 | 17.27 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 23.42 | 15.77 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G209800.1 | EnsemblPlantsGene:TraesCS4A01G209800 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF61 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr4A:-:503616427..503617851
Molecular Weight (calculated)
52226.0 Da
IEP (calculated)
4.809
GRAVY (calculated)
-0.043
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: METMSYPCSP LLSLPTHEES SFFMWSPQVA LHENATIHVD HPTDQQPDNV FLDTAAQDYA NDWHQQDASD LGVFTYCDER ILGQESGNLV AIQEELMEEN
101: SLTDLLLTGA EAVEAGDPRF ALAVFSRLDG LLLGSPENAA AGSFDRLAYH FAQGLRSRIS SASTSCSPPE PLASDRMSAQ QIIQELSPFA KFAHFTANQA
201: ILDATKGDTH VHVVDLNIGE GIQWPSFMSD LARHGGMSFH LTAITADADY TDGVHHASAR RLSEFADSLN LPFQYSCLCL HSDEDLHEFS KNCKGSVIFS
301: CDTTSMPYKL LSKLPALLPA CVKLLQPKLM VVVEEELVRI GKEVSLCKAS FVDFFFEALH HFTTVFESLA SCFVGGNQGA CLRLVEREMV GPRIQDFVGQ
401: YGSMTVEVTA PRVLERYGAC DLSGCNVAQA RMLVGLFNRG FEVVHEKGRL VLCWKSRPLT SVSVWAPILK ERSS
101: SLTDLLLTGA EAVEAGDPRF ALAVFSRLDG LLLGSPENAA AGSFDRLAYH FAQGLRSRIS SASTSCSPPE PLASDRMSAQ QIIQELSPFA KFAHFTANQA
201: ILDATKGDTH VHVVDLNIGE GIQWPSFMSD LARHGGMSFH LTAITADADY TDGVHHASAR RLSEFADSLN LPFQYSCLCL HSDEDLHEFS KNCKGSVIFS
301: CDTTSMPYKL LSKLPALLPA CVKLLQPKLM VVVEEELVRI GKEVSLCKAS FVDFFFEALH HFTTVFESLA SCFVGGNQGA CLRLVEREMV GPRIQDFVGQ
401: YGSMTVEVTA PRVLERYGAC DLSGCNVAQA RMLVGLFNRG FEVVHEKGRL VLCWKSRPLT SVSVWAPILK ERSS
001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ
Arabidopsis Description
SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.