Factsheet for PGSC0003DMT400010158

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g005610.1.1	Tomato	cytosol	95.55	95.94
KRH43393	Soybean	cytosol	48.58	49.28
VIT_04s0044g00620.t01	Wine grape	cytosol	39.47	48.87
TraesCS4D01G110800.1	Wheat	cytosol	32.59	33.97
TraesCS4A01G209800.1	Wheat	cytosol	32.59	33.97
TraesCS4B01G113300.1	Wheat	cytosol	32.39	33.76
Zm00001d053163_P001	Maize	cytosol	31.98	33.4
HORVU4Hr1G020490.26	Barley	cytosol	31.98	33.33
Os11t0160550-00	Rice	cytosol	29.96	32.1
PGSC0003DMT400031475	Potato	cytosol	31.98	31.85
KXG23028	Sorghum	cytosol	30.77	30.58
Zm00001d041919_P001	Maize	cytosol, peroxisome, plastid	28.54	28.66
Os12t0162700-00	Rice	nucleus	14.78	19.78
PGSC0003DMT400033037	Potato	plastid	20.85	18.9
PGSC0003DMT400012104	Potato	plastid	22.06	15.57
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	22.27	14.32
Os11t0160600-01	Rice	cytosol	0.4	4.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400010158	EnsemblPlantsGene:PGSC0003DMG400003980	EntrezGene:102606215	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF55	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400003980	RefSeq:XP_006351042.1
SEG:seg	UniParc:UPI000294FDF1	UniProt:M0ZXK6	MapMan:15.5.12	:	:

Description

GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003980]

Coordinates

chr11:-:7264053..7265537

Molecular Weight (calculated)

56294.0 Da

IEP (calculated)

4.870

GRAVY (calculated)

-0.213

Length

494 amino acids

Sequence
(BLAST)

001: MECENFQPNY INPYIEYSNL ETTFSWNNPS IINPQCSIQD FVTIVNDVDI LDYFQNDFDF IDGDVDIPLQ NTQQEIIQGD TELSREGQKS RVCNPRLEFL
101: QDQLMEETSV TDLLLMGAEA IEARNLDLAS IVVLRLNTIL SNQENRENSP VERLALYFTQ ALLCKTLNNS SHELLNQNQN QYQSEFTSSM TAFQMLQEIS
201: PYVKFAHFTA NQAILEATKG SEQVHILDFD IMEGIQWPPL MVDLVERGNT NSSLRITSLV SDHSNSCHVQ KTGKRLQEFA NSINLPFMFD QILLEDLEKI
301: QVVVEGHNNL IANVMIHQLH MPQRGSSLVK TFFNGLRKLS PKLVVLVEEE LFNLSKISSM SFVEFFCEAL HHYTTIYDSI LGGFGGGYML ALRVIEKEFL
401: RVRILDSLRQ FPSDKLGREK WSKGLYSLKG FRQSPMSSSN VRQAKHLVSL FSGGYWVQNE QNKLALCWKS RPLTSASIWV PVSSSSSPSS SISF

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.