Factsheet for PGSC0003DMT400012104

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078800.1.1	Tomato	plastid	66.43	98.1
VIT_02s0154g00400.t01	Wine grape	cytosol	39.71	54.3
Zm00001d022034_P001	Maize	cytosol	19.71	45.1
GSMUA_Achr6P36740_001	Banana	cytosol	28.86	42.35
GSMUA_Achr1P05940_001	Banana	plastid	30.71	40.72
GSMUA_Achr11P...	Banana	cytosol	33.86	39.83
Os10t0551200-01	Rice	cytosol	22.29	39.2
GSMUA_Achr5P20860_001	Banana	cytosol	31.0	39.17
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	41.14	37.5
GSMUA_Achr8P11160_001	Banana	cytosol	34.86	36.58
Zm00001d045589_P001	Maize	cytosol	25.71	36.0
Os06t0105350-00	Rice	plastid	24.43	34.97
Zm00001d027292_P001	Maize	peroxisome	24.0	34.93
EER87695	Sorghum	cytosol, plastid	25.14	34.31
Zm00001d047957_P001	Maize	cytosol	6.29	34.11
GSMUA_Achr11P...	Banana	cytosol	33.14	33.53
TraesCS1D01G212800.1	Wheat	cytosol	29.43	33.17
HORVU1Hr1G053510.1	Barley	plastid	29.29	33.06
TraesCS1B01G223400.1	Wheat	cytosol, plastid	29.43	33.01
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	29.29	32.8
TraesCS7D01G011400.1	Wheat	plastid	24.86	32.71
Os03t0103400-01	Rice	cytosol	22.14	32.7
Zm00001d035873_P001	Maize	cytosol, plastid	13.29	32.52
EES11245	Sorghum	cytosol, nucleus, peroxisome	32.86	31.94
Os04t0555000-01	Rice	cytosol	32.0	31.5
TraesCS4A01G482000.1	Wheat	plastid	24.43	31.49
EER91968	Sorghum	cytosol, mitochondrion	28.71	31.41
TraesCS6D01G229400.1	Wheat	mitochondrion	31.71	31.4
Zm00001d026158_P001	Maize	cytosol	32.14	31.34
Os02t0663100-01	Rice	cytosol	32.0	31.33
Zm00001d029855_P001	Maize	mitochondrion	28.86	31.32
TraesCS6B01G277400.1	Wheat	mitochondrion	31.29	31.29
TraesCS6A01G247200.1	Wheat	mitochondrion	31.43	31.25
Zm00001d002718_P001	Maize	cytosol	32.14	31.21
Os02t0662700-01	Rice	cytosol	31.43	31.03
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	31.14	31.01
Zm00001d022162_P001	Maize	cytosol	7.29	30.91
Zm00001d042852_P001	Maize	cytosol	10.71	30.49
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	27.57	30.3
TraesCS4D01G360200.1	Wheat	cytosol	27.71	30.22
TraesCS4B01G367300.1	Wheat	cytosol	27.57	30.06
EES05768	Sorghum	cytosol	30.71	30.03
TraesCS7A01G014200.1	Wheat	plastid	24.86	29.95
Zm00001d051387_P001	Maize	cytosol	30.14	29.8
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	26.86	29.47
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	29.71	29.46
Zm00001d018956_P001	Maize	plastid	6.0	29.37
PGSC0003DMT400033037	Potato	plastid	21.71	27.89
Zm00001d027569_P001	Maize	plastid	12.43	27.8
Zm00001d031615_P001	Maize	cytosol	10.57	27.21
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	13.29	26.27
OQU85680	Sorghum	mitochondrion	23.71	25.66
PGSC0003DMT400010158	Potato	cytosol	15.57	22.06
PGSC0003DMT400031475	Potato	cytosol	15.57	21.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400012104	EnsemblPlantsGene:PGSC0003DMG400004752	EntrezGene:102602862	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF52	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400004752	RefSeq:XP_006355471.1
SEG:seg	UniParc:UPI0002961808	UniProt:M1A0Q5	MapMan:15.5.12	:	:

Description

Hairy meristem [Source:PGSC_GENE;Acc:PGSC0003DMG400004752]

Coordinates

chr8:-:52451798..52454836

Molecular Weight (calculated)

76452.3 Da

IEP (calculated)

6.279

GRAVY (calculated)

-0.138

Length

700 amino acids

Sequence
(BLAST)

001: MIVIPQSSSL PAKGVLGVSG FVPSISSSSS PEAAICKKDA NFTRNEPVSV LDTRSPSPSA SSSSCSYGAQ HGGNTAVPGV GSGKTDGRKE EFVTELQPFT
101: VGLEPEKSGL GFGDLDNLLP EFAGSDQSFL RWISGDVEDP SVSLKQLLNG DLGCGVSLQS SGFEVSATGS LAHSDNVSIS GSNICLNANI EKLSSVIDSI
201: NSRNNNFENL NVNPSLEQKP QPFGPQVMAN QTQFQNVACV NILGSSYDIN QEQPPPKRHN SGTLGGSLLP KVPFFDANCD FMLRKQPLGQ MQPQVNLLPP
301: HQFQPKPLIV PKLEAAGGGG NGNLMVPRHQ LQEQQFIYDQ IFQASELLLA GQFSNAQMIL ARLNQQLSPI GKPSRRAAFY IKEALQLPFL LPCTSTFLLP
401: RSPTPFDCVL KMDAYKAFSE ISPLIQFMNF TSNQAILEAL GDAEQIHIID FDIGFGAQWS SFMQELPSSN RKATSLKITA FASPSTHHSV EIGIMHESLT
501: QFANDAGIRF ELEVINLDSF DPKSYPLSTL RSSECEAIAI NFPIWSISSC LFAFPSLLHC MKQLSPKVVV SLERGCERTE LPLKHHLIHA LQYYETLLAS
601: IDAANLTPDI GKKIERSLFQ PSIENMILGR LRSPDRMPPW RNLFASAGFS PVAFSNMTEI QAECVVKRTQ VGGFHVQKRQ TSLVLCWKQQ ELLSAVTWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.