Factsheet for Solyc08g078800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012104	Potato	plastid	98.1	66.43
VIT_02s0154g00400.t01	Wine grape	cytosol	57.59	53.32
Zm00001d022034_P001	Maize	cytosol	29.11	45.1
GSMUA_Achr6P36740_001	Banana	cytosol	42.41	42.14
Os10t0551200-01	Rice	cytosol	33.12	39.45
GSMUA_Achr1P05940_001	Banana	plastid	43.67	39.2
Zm00001d047957_P001	Maize	cytosol	9.28	34.11
Zm00001d027292_P001	Maize	peroxisome	33.54	33.06
Zm00001d035873_P001	Maize	cytosol, plastid	19.83	32.87
GSMUA_Achr11P...	Banana	cytosol	38.4	30.59
Os06t0105350-00	Rice	plastid	31.43	30.47
Zm00001d045589_P001	Maize	cytosol	32.07	30.4
Solyc01g090950.2.1	Tomato	cytosol	48.73	30.04
GSMUA_Achr5P20860_001	Banana	cytosol	35.02	29.96
Os03t0103400-01	Rice	cytosol	29.96	29.96
Zm00001d018956_P001	Maize	plastid	8.86	29.37
EER87695	Sorghum	cytosol, plastid	31.65	29.24
GSMUA_Achr8P11160_001	Banana	cytosol	40.3	28.64
Zm00001d027569_P001	Maize	plastid	18.57	28.11
Zm00001d022162_P001	Maize	cytosol	9.7	27.88
TraesCS7D01G011400.1	Wheat	plastid	31.22	27.82
HORVU1Hr1G053510.1	Barley	plastid	35.87	27.42
TraesCS1D01G212800.1	Wheat	cytosol	35.87	27.38
TraesCS1B01G223400.1	Wheat	cytosol, plastid	35.87	27.24
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	35.87	27.2
TraesCS4D01G360200.1	Wheat	cytosol	36.29	26.79
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	35.87	26.69
TraesCS4B01G367300.1	Wheat	cytosol	36.08	26.64
GSMUA_Achr11P...	Banana	cytosol	38.82	26.59
TraesCS4A01G482000.1	Wheat	plastid	30.38	26.52
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	34.6	25.71
TraesCS6D01G229400.1	Wheat	mitochondrion	38.19	25.6
Zm00001d029855_P001	Maize	mitochondrion	34.81	25.58
EER91968	Sorghum	cytosol, mitochondrion	34.39	25.47
TraesCS6A01G247200.1	Wheat	mitochondrion	37.76	25.43
EES11245	Sorghum	cytosol, nucleus, peroxisome	38.61	25.42
Zm00001d026158_P001	Maize	cytosol	38.4	25.35
TraesCS6B01G277400.1	Wheat	mitochondrion	37.34	25.29
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	37.34	25.18
Os04t0555000-01	Rice	cytosol	37.76	25.18
TraesCS7A01G014200.1	Wheat	plastid	30.8	25.13
Zm00001d002718_P001	Maize	cytosol	37.97	24.97
Os02t0663100-01	Rice	cytosol	37.55	24.9
Solyc02g085600.1.1	Tomato	plastid	28.06	24.81
Os02t0662700-01	Rice	cytosol	36.92	24.68
EES05768	Sorghum	cytosol	36.08	23.88
Zm00001d051387_P001	Maize	cytosol	35.65	23.87
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	35.44	23.8
Zm00001d042852_P001	Maize	cytosol	12.24	23.58
Zm00001d031615_P001	Maize	cytosol	12.03	20.96
Solyc11g005610.1.1	Tomato	cytosol	21.31	20.53
Solyc11g013150.1.1	Tomato	cytosol	20.89	20.33
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	14.56	19.49
OQU85680	Sorghum	mitochondrion	26.16	19.17

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	InterPro:IPR005202	UniProt:K4CNN9	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF52	EnsemblPlantsGene:Solyc08g078800.1	EnsemblPlants:Solyc08g078800.1.1	InterPro:TF_GRAS	UniParc:UPI000276AEF8	SEG:seg

Description

No Description!

Coordinates

chr8:-:62517241..62518665

Molecular Weight (calculated)

52985.0 Da

IEP (calculated)

7.712

GRAVY (calculated)

-0.114

Length

474 amino acids

Sequence
(BLAST)

001: MANQTQFQNA ACVNIFGSSS YDINQEQPPP KRHNSGTLGG ALLPKVPFFD ANCDFMLRKQ PLGQMQPQVN LLPPHQFQPK PLIVPKLEAA GGGGNGNLMV
101: PRHQLQEQQF IYDQIFQASE LLLAGQFSNA QMILARLNQQ LSPIGKPSRR AAFYIKEALQ LPFLLPCTST FLPPRSPTPF DCVLKMDAYK AFSEISPLIQ
201: FMNFTSNQAI LEALGDAEQI HIIDFDIGFG AQWSSFMQEL PSSNRKATSL KITAFASPST HHSIEIGIMH ESLTQFANDA GIRFELEVIN LDSFDPKSYP
301: LSTLRSSECE AIAINFPIWS ISSCPFAFPS LLHCMKQLSP KVVVSLERGC ERTELPLKHH LIHALQYYET LLASIDAANI TPDIGKKIER SLFQPSIENM
401: ILGRLRSSDR MPPWRNLFAS AGFSPVAFSN MTEIQAECVV KRTQVGGFHV QKRQTSLVLC WKQQELLSAV TWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.