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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • peroxisome 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:mitochondrion, peroxisome
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 Zm00001d019343_P001 AT1G72030.1 21798944
AT4G00150.1 Zm00001d050219_P004 AT1G60490.1 21798944
AT4G00150.1 Zm00001d013027_P002 AT5G66720.1 21798944
AT4G00150.1 Zm00001d034575_P001 AT5G66720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os03t0103400-01 Rice cytosol 58.42 59.28
Zm00001d035873_P001 Maize cytosol, plastid 34.51 58.04
Zm00001d047957_P001 Maize cytosol 15.38 57.36
Zm00001d022034_P001 Maize cytosol 35.76 56.21
TraesCS5A01G535000.1 Wheat cytosol, mitochondrion, peroxisome, plastid 69.65 52.59
TraesCS4D01G360200.1 Wheat cytosol 69.23 51.87
TraesCS4B01G367300.1 Wheat cytosol 68.81 51.56
HORVU4Hr1G087700.2 Barley cytosol, mitochondrion, peroxisome, plastid 68.19 51.41
Zm00001d027569_P001 Maize plastid 31.6 48.56
Zm00001d018956_P001 Maize plastid 14.14 47.55
Zm00001d042852_P001 Maize cytosol 23.08 45.12
Zm00001d029855_P001 Maize mitochondrion 60.5 45.12
Zm00001d022162_P001 Maize cytosol 15.38 44.85
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 28.9 39.27
Zm00001d031615_P001 Maize cytosol 21.62 38.24
Zm00001d045589_P001 Maize cytosol 37.84 36.4
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 13.51 35.71
VIT_02s0154g00400.t01 Wine grape cytosol 36.17 33.98
Solyc08g078800.1.1 Tomato plastid 33.06 33.54
GSMUA_Achr11P... Banana cytosol 41.16 33.28
Zm00001d002718_P001 Maize cytosol 49.06 32.73
GSMUA_Achr5P20860_001 Banana cytosol 37.42 32.49
Zm00001d026158_P001 Maize cytosol 47.4 31.75
Zm00001d051387_P001 Maize cytosol 46.57 31.64
GSMUA_Achr8P11160_001 Banana cytosol 43.04 31.03
AT4G00150.1 Thale cress cytosol, plastid 35.14 30.29
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 44.28 30.17
Bra003311.1-P Field mustard nucleus 30.35 28.85
GSMUA_Achr11P... Banana cytosol 40.33 28.03
Bra037319.1-P Field mustard cytosol, plastid 32.43 27.76
CDY63062 Canola cytosol, plastid 32.43 27.76
CDY63061 Canola cytosol, plastid 32.43 27.76
CDX95633 Canola cytosol 29.73 25.81
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 40.96 25.42
KRG88927 Soybean cytosol 38.67 24.97
CDY67934 Canola cytosol 30.98 24.92
CDX89065 Canola nucleus 28.48 24.91
CDY48367 Canola cytosol 29.11 24.82
KRH75351 Soybean cytosol 38.25 24.73
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 39.29 24.61
Solyc01g090950.2.1 Tomato cytosol 39.29 24.58
CDX83398 Canola cytosol 30.15 24.58
CDY56248 Canola cytosol 30.56 24.46
AT3G60630.1 Thale cress cytosol 31.39 24.24
KRH76167 Soybean cytosol 37.01 24.15
Bra000375.1-P Field mustard cytosol 30.35 24.05
PGSC0003DMT400012104 Potato plastid 34.93 24.0
KRH65380 Soybean cytosol 35.55 23.36
AT2G45160.1 Thale cress cytosol 30.77 23.12
Zm00001d053163_P001 Maize cytosol 21.41 21.78
Zm00001d041919_P001 Maize cytosol, peroxisome, plastid 21.62 21.14
Zm00001d028526_P001 Maize cytosol 22.04 18.79
Protein Annotations
EntrezGene:103630535MapMan:15.5.12UniProt:A0A060CVG2ProteinID:AIB04451.1GO:GO:0003674GO:GO:0003824
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987InterPro:IPR005202ProteinID:ONL92606.1PFAM:PF03514PFscan:PS50985PANTHER:PTHR31636
PANTHER:PTHR31636:SF34InterPro:TF_GRASUniParc:UPI00022151DEEnsemblPlantsGene:Zm00001d027292EnsemblPlants:Zm00001d027292_P001EnsemblPlants:Zm00001d027292_T001
SEG:seg:::::
Description
GRAS-transcription factor 53Scarecrow-like protein 6
Coordinates
chr1:+:2019934..2021379
Molecular Weight (calculated)
51257.6 Da
IEP (calculated)
6.575
GRAVY (calculated)
0.099
Length
481 amino acids
Sequence
(BLAST)
001: MHMPPLGLGA AEAWEPHAQP PGPGGLTLSH AQQTHDSTFL GWFIADDVAM SGVMDDHNSH SVLHDLDHIP SSSVPPPQFQ PLAPHVHYPP KLHHHQNPVV
101: PASPPKHTLL KPKPEAPGTD DASTAVDQLA EAAKLAEAGD VFGAREILAR LNYLLPPGAA TATPLLRSAF YFKEALRAAL STTASATAAA AAAPVDVLLK
201: LGAYKDFSEL CPVLQFAHFT CVQAMLDELG GAACIHVLDL DIGVGEQWAS LMQELASRRP GAALKVTALV SAASHHPLEL QLVHENLSNF AAETRVPFQL
301: AFFNLDAMDP AELLATAAGD AVAVHLPAGS VHAPAVPSVL HLVRRLGAKL VVSVDRSCDR GELPFAAHFQ SCVFLLESLD AVGTGPDITA KIERFLIQPR
401: IERCLAERYR AAAAGDKTPP WRAMLVSAGF VPVQASSLAE AQAEALLKKV PVRGFRVEKR AGSLVLHWQR GELLSVSAWR C
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.