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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 Zm00001d019343_P001 AT1G72030.1 21798944
AT4G00150.1 Zm00001d050219_P004 AT1G60490.1 21798944
AT4G00150.1 Zm00001d013027_P002 AT5G66720.1 21798944
AT4G00150.1 Zm00001d034575_P001 AT5G66720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d031615_P001 Maize cytosol 87.8 79.41
Zm00001d047957_P001 Maize cytosol 34.55 65.89
Zm00001d018956_P001 Maize plastid 33.74 58.04
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 80.49 55.93
Zm00001d022162_P001 Maize cytosol 29.67 44.24
Zm00001d029855_P001 Maize mitochondrion 89.02 33.95
Zm00001d035873_P001 Maize cytosol, plastid 39.43 33.92
EER91968 Sorghum cytosol, mitochondrion 83.33 32.03
Zm00001d027569_P001 Maize plastid 36.59 28.75
TraesCS1D01G212800.1 Wheat cytosol 69.51 27.54
TraesCS1B01G223400.1 Wheat cytosol, plastid 69.51 27.4
TraesCS1A01G209400.1 Wheat mitochondrion, plastid 69.51 27.36
HORVU1Hr1G053510.1 Barley plastid 68.29 27.1
Os10t0551200-01 Rice cytosol 42.28 26.13
Zm00001d027292_P001 Maize peroxisome 45.12 23.08
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 14.23 19.23
Zm00001d022034_P001 Maize cytosol 21.54 17.32
Zm00001d045589_P001 Maize cytosol 32.93 16.2
Zm00001d051387_P001 Maize cytosol 42.28 14.69
GSMUA_Achr11P... Banana cytosol 35.37 14.62
Zm00001d002718_P001 Maize cytosol 42.28 14.42
Zm00001d026158_P001 Maize cytosol 41.06 14.07
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 39.02 13.6
GSMUA_Achr5P20860_001 Banana cytosol 30.49 13.54
VIT_02s0154g00400.t01 Wine grape cytosol 26.83 12.89
CDY63061 Canola cytosol, plastid 29.27 12.81
CDY63062 Canola cytosol, plastid 29.27 12.81
Bra037319.1-P Field mustard cytosol, plastid 29.27 12.81
GSMUA_Achr8P11160_001 Banana cytosol 33.74 12.44
AT4G00150.1 Thale cress cytosol, plastid 28.05 12.37
Solyc08g078800.1.1 Tomato plastid 23.58 12.24
GSMUA_Achr11P... Banana cytosol 34.15 12.14
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 35.37 11.33
Bra003311.1-P Field mustard nucleus 23.17 11.26
Solyc01g090950.2.1 Tomato cytosol 34.96 11.18
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 34.55 10.97
PGSC0003DMT400012104 Potato plastid 30.49 10.71
CDX95633 Canola cytosol 23.58 10.47
CDX89065 Canola nucleus 22.76 10.18
AT3G60630.1 Thale cress cytosol 25.61 10.11
CDY48367 Canola cytosol 23.17 10.11
KRH75351 Soybean cytosol 30.08 9.95
CDX83398 Canola cytosol 23.58 9.83
KRG88927 Soybean cytosol 29.67 9.8
CDY56248 Canola cytosol 23.17 9.48
Bra000375.1-P Field mustard cytosol 23.17 9.39
AT2G45160.1 Thale cress cytosol 24.39 9.38
CDY67934 Canola cytosol 22.76 9.36
KRH76167 Soybean cytosol 26.83 8.96
KRH65380 Soybean cytosol 26.02 8.74
Zm00001d053163_P001 Maize cytosol 14.23 7.4
Zm00001d041919_P001 Maize cytosol, peroxisome, plastid 13.82 6.91
Zm00001d028526_P001 Maize cytosol 13.01 5.67
Protein Annotations
EnsemblPlants:Zm00001d042852_P001EnsemblPlants:Zm00001d042852_T001EnsemblPlantsGene:Zm00001d042852GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRAS
PANTHER:PTHR31636PANTHER:PTHR31636:SF125PFAM:PF03514ProteinID:ONM36408.1SEG:segUniParc:UPI0008441A48
UniProt:A0A1D6N743MapMan:15.5.12::::
Description
Scarecrow-like protein 6
Coordinates
chr3:+:182079970..182081122
Molecular Weight (calculated)
25839.2 Da
IEP (calculated)
5.511
GRAVY (calculated)
0.230
Length
246 amino acids
Sequence
(BLAST)
001: MGLGAGEGWD VADAVAPPGL APDHTFLRWI IGGEDASAAM GSVMDSPVLE LDHAPSMMSL AFGSTMPFAL TMEDAKPCCP AATLKGTALV SPASHHLLEL
101: NLIHENLSGF ARELGMFLQF ATYNVDALDP AELVAITSGD AVAVHLPVGS AHVAAMPAVL RLVKRLGAKV VVSVDRGCDR TELSFATHLL QAFQPCVSLL
201: DSSDAVGGAD AEAVGRIERF MVQSDVELRV VSRHRCRGGP SSRRRG
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.